RNA id: XM_022675617.1


Basic Information

Item Value
RNA id XM_022675617.1
length 4186
RNA type mRNA
GC content 0.52
exon number 13
gene id cdh22
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26723797 ~ 27069232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGTGGCgcgcgatagagagagagaggggatgcGCGCGCCACCGTTTGTTTCTCGCCGCAGCGCACGAGCGGAGCTTCATCTGAGGAGCAACTGCGAACCGGGAGGATCTCAAACTCATACCAGGGAGAAAAAACAGCACCGGTACAACCAgtacaacagcaccagcatctccagcatcagcaccagcagcagcttcagcggCACTGCGCCGGGCTTCAGATCCAGGGGACTTACAGGGATGAACACAAAGTGAAGAAATAGGACCATAAAGAATTCAGTACCTGCAAAGCAGATGTAGAGGTGAGCTGCTCATTTTCCGGCATGTTCTCCAGAAGATTGTGGAAGGTCAAGTGTGGATGCAGCTGATGCCTTGTCGAGGAAGCTATACCAAAGCACTAAACCCCCCGACTGCTGAGGATGTGGCTCATTACACGTTGCTGGGAAAAAGCAAGGAAATAGCGTCCGAGAGTTTGGAAAGTATTTTTTGCTCGAGTGAAgagttttaattacttttttgcGGTACCTTTTGGAAGAGTTTAAATGTGCGAATGTTCAGTGATAACATGGAAGagcacaaatgaaaaaaaaaacttattttggacatgcttcattttacaaataaatatagtaCAATAATTAAACCAGCAATAACGAATTTGCTGTCTCCACCACTGTCCTTCACCATAGCCTGATTGGGTTTGCTGAATGGGATTCAACCTAAAAGGCGACTAAAGCTCTGAATACTGCTTCTGTTTCTGCTTGGCTCTCTCGATTTCCAAGCATGTATTCACCTCATATCACCTGGCCCAAGTCCACAGAGTTCCACAGAGGCTCTGTTGTAGACACACAAGCCTGTGGTCTTGTGAGCAGTAGACCAGAGTGAACCCAACAGCCTGGGTCTTCAGCACAACCCCTGCAACAACTTCCAGAAACTTCCTTTTGGCTGAATTCCCCAGAATAACAGAATACTGCATTGTGCATTCACTACGATCCAGACCAGACCCTCAATAACTCACTGAGGAAACTCATAAATCTGCTGAGGAAAGGCAGCAATCTTCACATTTTGCGAAATGTTGAAAGATTAATTGGATTTCAAGCCTcttcaaacagaaaaaaaaaaaaaaaaaacgccttatTATTTGGAAGTTTATCTTGACTTGCGTTATGAACCTTCTCCACATGTAGAAGGCAGAGTTATCCCAATATGGTTGCCCACTGGAGAGGAAGGGCGTCGGCTCTGATGGTGACTCTGGGGGTCCTGCACTGCTGGTGTTGGGGGTCCTGTCATGTTGAAAGGACTAGTgagaaaagcactgtgtctcACGAACGAGTGAAGAGGGGCTGGGTGTGGAACCAGTTCTTTGTGGTGGAAGAGTACACAGGGACGGAGCCGCTCTACGTCGGAAAGATCCATTCAGACTCGGATGAAGGGGACGGCTCCATCAAGTACACCATATCCGGAGAGGGAGCAGGGACTATATTCATCATCGATGAGGTGACAGGAGACATCCACGCCACGGAGCGTCTGGACCGGGAGGAGAAAGCTTTCTACACGTTACGAGCTCAGGCTCGAGACCGGCAGACCGACGCCCCTCTCGAACCGGAGTCCGAGTTCGTCATAAAGGTCCAGGACATCAACGACAGCGAGCCCAAGTTCCTGGAAGGACCGTACATCGGGAGTGTGGCTGAGCTGTCTCCAATCGGAACTTCGGTAATGAAAGTGATGGCATCGGACGCGGACGACCCGACCTACGGCAGCAGTGCCAGGATAGTGTACAGCGTTCTGGATGGAGAGAAGTTCTTCTCggttgacagacagacagGAGTGATTCGAACGGCGGTGGCTGATCTCGATCGGGAGACGCAGGACCGCTACGAGCTGGTCGTCAAGGCAACAGACATGGCAGGCCAAATGGGCGGTCTCTCTGGCTCCACCACGGTGACCATAGTGATCACGGACGTTAATGACAACCCTCCACGCTTCCCTCAGAAGATGTACCAGTTTTCCGTTTCGGAAGGGGCGTCCGTCGGAACGTCGGTCGGCCGGGTGGTTGCGACGGACGCGGACATGGGCGAGAACACGGACATGAGCTACCTGATCAAAGACGAGGAAGGAGGAGAGCTGTTCAAAGTCTCCACTGATGGAGACACCCAGGAGGCCGTCATCACCATCAAGAAGCCTCTTGACTTTGAGAAGAAGCGAACCCATAACGTGGTGGTGGAGGCAGTTAATAAACATGTGGACCCCCGTTTTGTGGACTTGGGCTCGTTCCGGGATCAAACCATCGTCAGGGTCAGTGTTTCGGACACAGATGAGCCCCCGATATTCTTCCCTCCCACTGGAACTATTATGGAAGTGCAGGAAGACGCCAAGCAGGGGGCTCTTGTGGGGATTGTCACTGCCAAGGACCCAGATATGGATAACGTACCTGTGAGATACTCGATAGACCGGAGCACAGACCAGGAACAGATTTTCAACATTGATGCTGTGACTGGTGCCATCACCCTGGGGAAGATATTGGACAGGGAAACGGCAGGTTGGCACAACATCACAGTGACAGCCGTAGAAGCAGATAACCAGTCCATGGCTTCCCAGACAGCAGTTAGCATCCGAATTCTGGATGTGAATGACAACCCGCCTGAGCTGGCCACCCCTTATGAAACTAAAATCTGTGAGGATGCTAAACCTGGCCAGCTTATTCACACCATCAGTGTGGTGGACCGGGATGAACCTCAGTCTGGCCACCGCTTCTATTTCACACTGGCGCCCGAAGCCTCCAACAACCGCCATTTCGCACTGTGGGACGTCAAAGACAACACGGTGGGCATTAGGACCCAGCGATCGGGTTTTAACCGGCAGGAGCAGAACGTCTACCTGTTGCCGATCCGGGTGGTGGACAGCGGACCCCCAGCACTGAGCAGCACCGGGACCTTCACTATCCGCGTGTGCGGCTGCGACACTGTAGGAAACATCCAGTCATGCAACGCGACGGCGTTCGTCATGTCCGCGGCGCTCAGCCCCGGAGCCCTCATCGCCCTGCTGGTCTGCATGCTCATCCTCATAGtCCTGGTGCTTCTGATCCTGACCCTGAAGCGGCACAGGAAGGGTCAGCGCATGTCTGAGGATGAGGAGGACATGCGCGACAACGTCATCAAGTACAACGACGAAGGCGGGGGCGAGCAGGACACCCAGGCCTATGACATGAGCGCCTTGCGGAGCCTCTACGACTTCCCCGAGGTGAAGAGCTCCGAGTCGGGCACCGACCTGCGCTCTCTGCCCCAGTGGATCCAGAACCGGGTGACGGGGGACGGAGGGGCCGCCGACTTCTCCCTGTTCAAAGGCTACATCCGTAAGAAGGTGGAGCAGGCGGACGCCGACCTGTCGGTGCCGCCGTATGACTCGTTCCAGACGTACGCCTTCGAGGGCAGCAGCTCGCCGGCGCTGTCCCTCAGCTCCATCCGTACACTGTCCAACACCTCAGAGCAGGACTTCTCCTACCTCAGTGACTGGGGGCCGCGCTTCAGGCAGCTGGCAGGCTACTATGCGCCTGGACAGCCGGAGGAGGAGGGGTCCTAGCACTGCCCTTCCTTTCTTCCATTATTCCTTTCTTTCAAATTGTCACAGAAGACAATGTTCTTGTTCCACAGCCCCTATTGTCCAGTCCTGGAAGTGCCACCACCAACCACTGTCCTCTACCAGTGCTCTCCTGAGATAAATCTTGGAATTCTTGGATCCCAGTCAGTGGCGAGGGTCTTAATACAGCACCCCAGACCCTGAAAAAAAGCCACAAATGGTTTGCTTCGGTtgcttttgggaaaaaaaaaaagaaatataaataaaagctcaTGACAAGAAGTGGCAGAGTAGCAAGACATGCTAGGAGTCGGGCAAAGCTCCAATAAGCTGGCACCTGTCAGAGCGCTACAGGACAGCCATGCCGTGCCATATGCACAACACTGAACTGTCATTGTTTCCtttctaagtgtttttttttttttatttcttgtgtgtgcgtgtgtactTTCCTCGCTCTGTTGGCGGAGACAAACATGGACTAGTGACTCAGTagtgagattaaaaaaaacacacagaaccgCAGAACCAGGAGGAAAGTCTTCTCTACCAAGCCAAGGCAACCCAACCCAGTTTCCCCAGAGGAGAACATGTATTTATTAaggagaat

Function

GO: NA

KEGG:

id description
K06812 CDH22; cadherin 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153952 lncRNA downstream 34671 26688729 ~ 26689126 (-) True G113942
TU153927 lncRNA downstream 87495 26633723 ~ 26636302 (-) True LOC111193690
XR_002650627.1 lncRNA downstream 87555 26633735 ~ 26636242 (-) False LOC111193690
TU153925 lncRNA downstream 90570 26632977 ~ 26633227 (-) True G113917
TU153915 lncRNA downstream 94037 26629483 ~ 26629760 (-) True G113912
TU153959 lncRNA upstream 56933 27126165 ~ 27126369 (-) True G113949
XR_002650628.1 lncRNA upstream 91530 27160762 ~ 27189599 (-) True LOC111193691
TU153966 lncRNA upstream 128671 27197903 ~ 27198191 (-) True G113956
TU153974 lncRNA upstream 203618 27272850 ~ 27273123 (-) True G113964
XR_002650696.1 lncRNA upstream 396712 27465944 ~ 27467318 (-) True LOC111193753
XM_007252675.3 mRNA downstream 421402 26292415 ~ 26302395 (-) True gcnt7
XM_022675612.1 mRNA downstream 517227 26152447 ~ 26206570 (-) True eya2
XM_022675611.1 mRNA downstream 622276 26091651 ~ 26101521 (-) True LOC103030576
XM_022675607.1 mRNA downstream 704350 25711231 ~ 26019447 (-) True LOC103035347
XM_022675091.1 mRNA upstream 224327 27293559 ~ 27317236 (-) True znfx1
XM_022675618.1 mRNA upstream 254637 27323869 ~ 27344463 (-) True ddx27
XM_007252677.2 mRNA upstream 278235 27347467 ~ 27352451 (-) True snrpb
XM_007252679.3 mRNA upstream 288956 27358188 ~ 27385149 (-) True LOC103032591
XM_022675619.1 mRNA upstream 444167 27513399 ~ 27563022 (-) True LOC103038159
TU153885 other downstream 330600 26346140 ~ 26393197 (-) True G113888
TU153804 other downstream 661513 26032895 ~ 26062284 (-) True G113826
trnar-ccg_1 other downstream 1722041 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 2822299 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 2930336 23735954 ~ 23793461 (-) True G113276
XR_002650695.1 other upstream 248176 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 1056004 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 1279033 28348265 ~ 28361481 (-) True G114270
TU154464 other upstream 1279033 28348265 ~ 28361481 (-) False G114270
TU154468 other upstream 1279033 28348265 ~ 28361481 (-) False G114270

Expression Profile