RNA id: XM_022675611.1


Basic Information

Item Value
RNA id XM_022675611.1
length 2182
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC103030576
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26091651 ~ 26101521 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGCGCTCGGGATCCTGATTGGCCACCGGCGAGGCCGTGATAAACACACGAGCGggtatatatattgtgtggaGGGATGTTGACCCAAAAAGAGAAAGCgtgcagaagagagagagagaaagagggaaagagaaagaaagagagagagaaagagagagagacattagcTAACCATGAGAAGAGCGCACTCTCGCATTGCCGGGCTGctccagcagcaggagctcGCGGCGCTGCAGCACAGCAAGCCCACCTCCTCAGCCTGCGTGCTCGAGGCCAAGGATGCTCCGGCTCCTGCTGCGGCGCGCGGCTGCCCTCACCACCCCCACAGCCTGCACTCTATCCCCGGACCCACCAACTGGCCATTGCTGGGCAGCCTCTTCGATCTCGTGCGCAGAGGGGGCCTGAAGAGGCAGCACGAGGCTCTGATCGACTACCACAAGAAATTCGGTAAAATCTTCCGGATGAAGCTCGGCTCCTTCGAGTCGGTCCACATCGGCGCGCCGTGCTTACTGGAGGCGCTGTATCGGAAGGAGGGCAGCTACCCTCAGAGACTGGAGATCAAACCCTGGAAAGCCTACAGAGACCTGCGGGACGAGGCTTACGGACTCCTCATCCTGGAGGGGAAGGACTGGCAGAGAGTGAGGAGCGCGTTTCAGCAGAAGCTCATGAAGCCCAGCGAGGTGGTGAAACTGGACGGGAAGATTAACGAGGTTCTAGCAGACTTCATTGACAGAGTTGGAACAGTCAATGTCAACGGGAAGATTAACGACTTGTACTTTGAGTTAAACAAGTGGTCGTTTGAAACCATCTGTTTTGTGCTCTATGATAAACGGTTTGGCCTTCTGCAAGAAAAGGTGGATGAGGAGGCCATGGACTTCATCAATGCCATTAAAACGATGATGAGTACATTTGGCACGATGATGGTGACGCCCGTGGAACTGCACAAGAGCCTGAACACAAGGACATGGCAGGAACACACAGCTGCGTGGGACCGTATTTTTAGCACAGCCAAACTCTACATTGACAAAAAGCTGAAGAGACACTCGAGCGGCCCATCCGACGACTTCCTCTGCGACATCTACCACAACAGCCCCCTCACCAAGAAGGAGCTTTACGCCGCGACCACCGAGCTCCAGATCGGGGGGGTGGAGACAACCGCTAACAGCACACTGTGGGCTATTTTCAACCTCTCGCGGAACCCCCGCGCCCAGGACAAGCTGCTGAAGGAGATCACGGAGGTGGTGCCCGCTGGAGAGACACCAAGTGCTGAGCACATCAAGAACATGCCGTATCTCAAAGCTTGTCTGAAAGAATCCATGAGACTCACGCCCTCTGTGCCCTTCACGAGCCGGACTCTGGACAAAGACACCGTGCTGGGAGATTACACCTTACCTAAAGGAACAGTGCTGATGATTAACAGTCAGGCGCTGGGTGCCAACGAGGAATACTTTGATAATGTGAAGCAGTTCAGACCTGAGCGTTGGCTCCAGGACAAAAACTCCATCAACCCCTTCGCCTACGTTCCTTTTGGCATCGGCAAGAGGATGTGCATCGGCCGGCGTCTGGCAGAGCTGCAGATGCAGCTGGCTCTGTGCTGGTTAATTCGAGATTATGAGATAGTGGCGACGGATGACGAGCCGGTTAAATCCGTGCATTCGGGAACGCTGGTGCCGAGCCGAGAACTTCCAGTGGGGTTCATCCGCCGGTGAGGACTCGTTCTCCCACCCCAGTCTCTGGAAACAGATACCGAAACTCCACAGCCTCCACAGGATTTTGAAGCATGAAGGCTTCATTTATGCTGCTGTCAAACTCTACTAATGTGATCCCTTTAGATATACCTCAGACCACGATTTTATAGTTTACATAGTTTATCTTTACTAATATAGACATAGATGTACATATATTCCatgttatattgtaaatttgtaatAATCAGTATGTATTTATCAGTTTAGCTGACCAAACTGACAGACAAATAACGATCAAATCTCATAATGCTATCTACTACACTACCtattaaatacacaaatacatatatacttatttttttagccttaaatttaaaaaacactttattatccacatactgaatgtttttttcttcaatgaATGATGACAGAAATGTTTATGAAATGTATATAAGTGTAATATACTACAGAAGCTAAcactatttatacatat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07436 CYP24A1; vitamin D3 24-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650626.1 lncRNA downstream 14946 26076039 ~ 26076705 (-) True LOC111193689
TU153788 lncRNA downstream 83656 26005522 ~ 26007995 (-) True G113818
TU153744 lncRNA downstream 405074 25635304 ~ 25686577 (-) False ctsa
TU153731 lncRNA downstream 508674 25582623 ~ 25582977 (-) True G113771
XR_002650694.1 lncRNA downstream 517182 25568337 ~ 25574469 (-) False LOC111193751
TU153853 lncRNA upstream 161341 26262862 ~ 26263175 (-) True G113865
TU153884 lncRNA upstream 242650 26344171 ~ 26386866 (-) True G113887
TU153897 lncRNA upstream 380093 26481614 ~ 26481831 (-) True G113899
TU153899 lncRNA upstream 384162 26485683 ~ 26486012 (-) True G113901
TU153921 lncRNA upstream 492900 26594421 ~ 26594696 (-) True G113913
XM_022675607.1 mRNA downstream 72204 25711231 ~ 26019447 (-) True LOC103035347
XM_022675609.1 mRNA downstream 201989 25711231 ~ 25889662 (-) False LOC103035347
XM_022675608.1 mRNA downstream 201989 25711231 ~ 25889662 (-) False LOC103035347
XM_022675087.1 mRNA downstream 405632 25671465 ~ 25686019 (-) True ctsa
XM_007252151.3 mRNA downstream 510725 25578698 ~ 25580926 (-) True LOC103025798
XM_022675612.1 mRNA upstream 50926 26152447 ~ 26206570 (-) True eya2
XM_007252675.3 mRNA upstream 190894 26292415 ~ 26302395 (-) True gcnt7
XM_022675617.1 mRNA upstream 622276 26723797 ~ 27069232 (-) True cdh22
XM_022675091.1 mRNA upstream 1192038 27293559 ~ 27317236 (-) True znfx1
XM_022675618.1 mRNA upstream 1222348 27323869 ~ 27344463 (-) True ddx27
TU153804 other downstream 29367 26032895 ~ 26062284 (-) True G113826
trnar-ccg_1 other downstream 1089895 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 2190153 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 2298190 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 2538587 23552349 ~ 23553064 (-) True G113190
TU153885 other upstream 244619 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 1215887 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 2023715 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 2246744 28348265 ~ 28361481 (-) True G114270
TU154464 other upstream 2246744 28348265 ~ 28361481 (-) False G114270

Expression Profile