LOC111193689


Basic Information

Item Value
gene id LOC111193689
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26076039 ~ 26076705 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650626.1
ACTCGGCGTGGCGTTCCATAAGAACGCCGAGAGCGACCTGGGGTACGGACCGCGAGGCTAGCTGGCCAAACAGACACGGGAGGTTACTGAAGCAGGAGCACGCGGTGATGACGGCGGCCGTCGGAAGCGTGTTGGACTGGTGACTGAGGGTCGAGCCATACACTGTGGGCAAGCGGCTGCTGGTTCTGAGTACAGTTTTGACTGTGCTCAGAGCGGTGTGAGTAGAAACAGCCTTTTTAGTTACAGTGTATGTGGCTGTAGAGTGATAGTTGGCTTGCTGTTATGAGGAGTTTTATTCAGTAAATTGCATAAGGACGTGATTGGACCCTGTGCACTGAAGAGCTGCATCTGCCTGCCCCGGAAGCTGTTCATCTTCGAGACagacattttgtttattttgtgttttgttttttatattaattttgctccttttttttgtttattgattaTTCATTCTGGTCTGAGGTTTTGAACCTTAAAAGTtatgcaaatatttttattctgacTCATGCGTGATTTTTAGCTGGTTTATTGTCTAGaggtaataataatttaataaaaggctttgtttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650626.1 True 575 lncRNA 0.44 2 26076039 26076705

Neighbor

gene id symbol gene type direction distance location
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding downstream 56592 25711231 ~ 26019447 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding downstream 495113 25578698 ~ 25580926 (-)
cygb cygb,cygb2,LOC107698994 coding downstream 562552 25489609 ~ 25513487 (-)
sphk1 NA coding downstream 629137 25404994 ~ 25446902 (-)
aanat aanat coding downstream 747011 25321896 ~ 25329028 (-)
LOC103030576 LOC108431845,LOC107696435,LOC108271496,LOC107560513,LOC107666154,LOC100690876 coding upstream 14946 26091651 ~ 26101521 (-)
eya2 eya2,LOC107666141,LOC106565282 coding upstream 75742 26152447 ~ 26206570 (-)
gcnt7 NA coding upstream 215710 26292415 ~ 26302395 (-)
cdh22 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding upstream 647092 26723797 ~ 27069232 (-)
znfx1 NA coding upstream 1216854 27293559 ~ 27317236 (-)
G113818 NA non-coding downstream 68044 26005522 ~ 26007995 (-)
G113771 NA non-coding downstream 493062 25582623 ~ 25582977 (-)
LOC111193751 NA non-coding downstream 501570 25568088 ~ 25574469 (-)
G113767 NA non-coding downstream 512634 25561295 ~ 25563405 (-)
G113756 NA non-coding downstream 546108 25529658 ~ 25529931 (-)
G113865 NA non-coding upstream 186157 26262862 ~ 26263175 (-)
G113887 tfap2c,LOC102234024 non-coding upstream 267466 26344171 ~ 26386866 (-)
G113899 NA non-coding upstream 404909 26481614 ~ 26481831 (-)
G113901 NA non-coding upstream 408978 26485683 ~ 26486012 (-)
G113913 NA non-coding upstream 517716 26594421 ~ 26594696 (-)
G113826 NA other downstream 13755 26032895 ~ 26062284 (-)
ctsa NA other downstream 389462 25635304 ~ 25686577 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 2059238 24004549 ~ 24016801 (-)
G113304 NA other downstream 2174541 23901123 ~ 23901498 (-)
G113276 NA other downstream 2282578 23735954 ~ 23793461 (-)
G113888 NA other upstream 269435 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 2048531 28125236 ~ 28129856 (-)
G114270 NA other upstream 2271560 28348265 ~ 28361481 (-)
G114304 NA other upstream 2506688 28583393 ~ 28584959 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 3070731 29147436 ~ 29162803 (-)

Expression


Co-expression Network