sphk1


Basic Information

Item Value
gene id sphk1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25404994 ~ 25446902 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252143.3
ttttatgtgttttggtaATAGGAATGAAAAAATGTAACCATCTTCGGTTACAGCTGCCTGAAAAAACTGTTTCTCAATTTGGAAACAGATAGATATAAACAtctgaatttatttttaaacccgtaagttgtctctttttttcctcacacGTTCAATACAAAACACAttgttaaaaattataatatcagATTTTGGGCCCTACGTGGTTGGGAACTTTTAGTGTATCTGTATCCGACGTAGGAAAGCTGTACACACTGGcaccccattcattcctatagGAAAAGTCCAGAGGGAGATcgtaataatatacagtatttagatGTTTTAAGAGTTGTTAGACCTGCAGAACTGGTGGTTTCTGGAGTGGGCGTGGCCGGTGTTGGTTAATGCAGTCCTGTTCTGTGCTGTTGTATTCAGCGCTGTTTTGTGGTGAGGTGTTCACTTGATGAATGCGGGTGTATTTCTCCAGCAGGGGGAGTCGTGGTTCTGTTTACCCCTCGTGTCTCAGCGCTCAGACTCTCATTCACTCAGtcggtcagtcagtcagtgagccGGTGAGCGCGCGCGCAccctctcactctacctcagaaGAGTTCAGCCCTTCCGCGCGGCCCCACCAGCACCCCTCCGGCACCCTCCGTCCTCCGCAGGCTGGATGGAGCCGCTCGAGCCCGTCAGGAACGGCGCCTCGCGCCCGGTCCAGATGTACGGGGAGTTCATGGGGAAGGGGGTCCGGTACGCTGTGAGTCTGTCGGAGCGCGAGCTCACCGTCCGCAAGCTGTGCGCGAGCGGGAAACCGGCCCCCGCCGTCTTCAGCCTGGCGGACTGTCTTGGGAGCCGCGCGCACCGTGACGAGGAGGAGGGCGCGAGCGTCGGCGCTAGTTTCTCCGCGTACTTCTACCCGTTCCGGCGGCGGCGCTGGGCGGGAGCGGGCGCCGCGAGACACCGCGTGGAGCAGCGGTTCCGTGTAAACAGCGGCGGAGACGCGCGCGCGAACCTGGAGGAGGCCAGGCGGTGGGCGCGAGCTATACGCGAGGGTTCCATGCGGAACCGGCTGTCGAGAACAGgtggtGTATGTGCGGAGGTGAAGAGCCCTTGTAGAGTTCTGCTGCTGTTGAATCCTCTTAGTGGCAAAGGCCAGGCTCACACACTCTTCACCAGCCATGTACAGCGGATGCTGCAGGAGGCCAGCATACCCTACACACTTACCATTACAGAGCGTCAAAACCATGCCCGGGAACTGGTGAGAGAAGCAGACTTATCTCAGTGGGACGCTCTGGCTATCATGTCAGGAGACGGGCTTCTGTTCGAGGTAGTGAATGGCCTCATGGAACGAGACGACTGGGAGGAGGCCATTAAGACTCCACTGGGAGTGCTGCCTGGGGGTTCAGGGAACGCAGTAGCTGCCTCCATGCACCACTACTGCGGGTTGCAGCCAGTGTCTGGTGAGGAGCTGCTGGTAAACTGTGGCTTCATGCTGTGTAAAGGCCTGGTGTCGCGCCTGGATCTCACCTCTGTCTGCATGGCATCCAGTCAGCGGCTCTTCTCCTTCCTCTCTCTTGCCTGGGGCTTCGTGGCTGATGTGGACATTGAAAGTGAGAAGTATCGTCACGTTGGGGCAGCCAGGTTCACTCTGGGTACACTCGTTCGCCTTGCTTCGTTGAGGATTTACCAGGGCAAGCTTTCTTACCTGCCTGCTGAGGAGCCTGGGACACATCCATGCTCAATAGAGTCAACAGAATCCTTGACCAATGTTCCCCAGTCTATTAGCTCATCTTTAGACTACGCTAATGACCTACAGTGTCAGAATCACCCTCTCCACAACTCCTGCAACTCCAACAACGCACTCAAACCCAAACGGACTCATCCTTCTGTGTTGGGCCCTCCAGACTCGCTCCTTGTGCCCCTCGACCAGCCAGTGCCAGCACACTGGACGGTGGTCAATGAGGAGAACTTTGTGCTGGTGCTAGCTGCATACCAGTCCCACCTCGCAGAAGACCTGATAGCTGCCCCAGCATCCAGACTGGAGGACGGTGTCATACACCTGATCTACGTTACAGCAGGCATCTCACGGGCAGCTCTCTTGCGGCTCTTTCTGGCCATGGAAAAAGGCACCCACCTGAGCACAAACTGCCCAAACGTGGTGTACGTAAAAGCACGGGCGCTACGGCTAGAACCCCTTTCGCCCAAAGGAACGATCACTGTGGACGGGGAGCTGGTGGAGTACGGCCCAGTGCAGGCACAAGTACACAGCAGCCTGGCTAGACTCATAGCTGGATAGATAGTATTACACAGAACCATAAGTGCTAACCTCAATTACAGCTAACAGGAGACAAGAGCTAGCAAGGTCAGTTAGCATGAAGCTAGCTGCTGGATGCCATGCTTTGCTagcttttgtttattgttgtccAGTTTAAAAGTAGTTAATACCATGAACTTAGATGACTTAATATGAATTACTGGAAACACAGGTTCTTAGCAGAAGCTACATGACTGAACTGATGTGAGATGTGAGTTTTGGTGAGACCCCAAAGTTTTGCTAACGCTGCTAACAACAAAAGCTAGCATGAACCTTTAAAGATGATTCTATTTTGATGGTTTAACTAAATGGCtcgaactctttttttttttttaagattttcaaGCTGGTCCTAGAATCATGAAATATACTAAGAGCAGGTTCTGTGATTTTTGGAAAGCAATGATTTCTACCTTTTGAACAACATCTGATGCTAATTTTAAAAATGCGACAGAATGTATTTAAACTAATTGagagtaattttatttttttacttaaagttCTAACACTGctaatatatacaatatgaaCATCCCAGTTTACTTGTCTTGTTACAAGAAATGGTGCATCACTGGATGAGTTTGGATTAAGAGTCTTTTGATTACGATACTTCAAAGATcttgttggtttgttttctgaaaaagcaaaagcaaaggtGTCCATCTGGATATCTATCACTGTGTGAATTGTAGGTTTAACCCCAGTTTAAAACGTTGGCCCacagtttaacactgtttaGATGCTTCTGGCAGTGAGTGCTACAACAATATAACTCAAGTGGTACAGTTAAGTTATTACTTTTTACAGTAACTTAGAAAACTCAGAGACAACATTGCTAATGAAAAATAGGACAAAGAAAGAACTTCACATATTTTTCTAGGTAGAAAactgattatattttatttttgcccaataaaaacaaaacaaacacatgcagccttagcttttattttgttctcaAGCTGGGCAATAGAATGTCCTTTACACGAGTTCATGCAGGAAGCGTTAACATCTTTCTGCATGGCCAGTAGTGGGCACCATTTcctttaatttataatattatccTCAATTATTTAGTTGCTACTTTTACTTGGCATGTATAGAGGATGATCTAACAAAGCCCAGCATTATTAAATGTCTATTTTGATATTGACCGACacttatattttaagtataagCCACAAACCACTTACATTTTGTAGTTTCTTTGATTGACACTGCAAAATTAAGCACTTTTAATCCATTTAAATTGCACTATGTATGAGCTGAGGGGAAAAACATagcgcatccaacaagaacAAATGCCTTATCTTTTAAACCACAATGGAAACATTAGAGCATAGATTGTTGCAGTTGATTTATGTTACATGTTTCACCTAGGAAACAGCCTGTGGAAAGTGGATACCAAGTCACTTACAGTTCCTGTGACTGGCAAATGTTGCTTAGCGTATATTGCAAGTGGCTCTTTTAGTTTTGTGGCCCAGCAGTTGTCACAGAAAGCCTGAATGAATGAGAGTGCTGCTACTATATGCTGAAACTCTATGCTGTTCTGTTCTGAAGGTTAACCAGACAGAAACCAACTTTTGTGAAGAAAACCTGTAAATTAGGTTGTACAGATCTTAAGATCTTAACCCAATAAAATGCATCTCAgttgg

Function

GO: NA

KEGG:

id description
K04718 SPHK; sphingosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252143.3 True 3954 mRNA 0.47 5 25404994 25446902

Neighbor

gene id symbol gene type direction distance location
aanat aanat coding downstream 75966 25321896 ~ 25329028 (-)
ten1 NA coding downstream 195683 25205651 ~ 25209311 (-)
cep95 NA coding downstream 289298 25096237 ~ 25115696 (-)
trnar-ccg_1 NA coding downstream 403238 25001684 ~ 25001756 (-)
c13h17orf58 cunh17orf58,LOC102781445,LOC105900187 coding downstream 405101 24985711 ~ 24999893 (-)
cygb cygb,cygb2,LOC107698994 coding upstream 42707 25489609 ~ 25513487 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding upstream 131796 25578698 ~ 25580926 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding upstream 264329 25711231 ~ 26019447 (-)
LOC103030576 LOC108431845,LOC107696435,LOC108271496,LOC107560513,LOC107666154,LOC100690876 coding upstream 644749 26091651 ~ 26101521 (-)
eya2 eya2,LOC107666141,LOC106565282 coding upstream 705545 26152447 ~ 26206570 (-)
G113668 rhbdf2 non-coding downstream 83137 25318549 ~ 25321857 (-)
G113652 NA non-coding downstream 119451 25230816 ~ 25285543 (-)
G113649 NA non-coding downstream 185239 25216815 ~ 25219755 (-)
G113631 NA non-coding downstream 204876 25199179 ~ 25200118 (-)
G113547 NA non-coding downstream 419360 24983688 ~ 24985634 (-)
G113753 NA non-coding upstream 23570 25470472 ~ 25473655 (-)
G113756 NA non-coding upstream 82756 25529658 ~ 25529931 (-)
G113767 NA non-coding upstream 114393 25561295 ~ 25563405 (-)
LOC111193751 NA non-coding upstream 121186 25568088 ~ 25574469 (-)
G113771 NA non-coding upstream 135721 25582623 ~ 25582977 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 1388193 24004549 ~ 24016801 (-)
G113304 NA other downstream 1503496 23901123 ~ 23901498 (-)
G113276 NA other downstream 1611533 23735954 ~ 23793461 (-)
LOC103040267 LOC108433657 other downstream 1841187 23559101 ~ 23563807 (-)
G113190 NA other downstream 1851930 23552349 ~ 23553064 (-)
ctsa NA other upstream 188402 25635304 ~ 25686577 (-)
G113826 NA other upstream 585993 26032895 ~ 26062284 (-)
G113888 NA other upstream 899238 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 2678334 28125236 ~ 28129856 (-)
G114270 NA other upstream 2901363 28348265 ~ 28361481 (-)

Expression


Co-expression Network