cygb (cygb,cygb2,LOC107698994)


Basic Information

Item Value
gene id cygb
gene name cygb,cygb2,LOC107698994
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25489609 ~ 25513487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252144.3
acagaaagagagatacagggaaaaaaagaaagaaaaagaaggaagacAGTGTTTGTTTGGTCCATAGACGGGTGTCAGGAGTCGAGGGCATCCTGCCTGCCCAAGGGTGCAGCGAGGGGCAAGGGGTGAGAGGGAGGCTGGACACCCTCTGCTCTCTCTGCTCTATTGCCCTGCGCTCCTGCTGCCCCCTGCGGCTCCTGCGCCGCCCCTCACCACCCCCCCAGCCCCTAATCGGCCCTTCATCACCTGGCTCTGGACCGGGCTCCCCACCTTGTGCCTGCgggatggagaaagagagggacgTGGATGAGCCGGAGCGGAGGGAGCGCGCCGAGCCACTCAGCGACCTGGAGTGCAACATTGTGCAGAACACCTGGGCAAGAGTCTACGAGAGCTGTGAGGATGTGGGCGTGGCCATCCTCATCAGGTTCTTCGTGAACTTTCCCTCGGCAAAGCAGTACTTCAGTCAGTTCCAGGACATGGAGGATCCTGAAGAGATGGAGAGGAGCTCCCAGCTGAGGAAGCACGCCTGCAGAGTCATGAACGCCATCAACTCAGTGGTGGAGAACCTCCATGACCCAGAGAAGGTGACGTCTGTACTGGCGCTGGTTGGGAAGGCTCATGCACTCAAACACAAAGTGGAGCCCATGTACTTCAAGATCTTAAGTGGGGTTATTTTGGAGATCTTGGCAGAGGATTTCGGCGAGTGCTTCACCCCCGAGGTGCAGACGGCCTGGACCAAACTGATGGCGGTGCTCTACTGGCACATCACTGGAGCCTACCAAGAAGTGGGCTGGGTCAAGCTCTCCAGTTCAGCTGTCTGAGACCAGCCTCAACCAtgcacacataaatacacacacacatatcgaaacacacaaaaacacaaaaaacataaacagaCTGGTTTTAACACCCATTTGGACTGAACAAAATGCAGAAGGGCGGGAAGAAAATGCATTGGATAAAAAGGATGGAGGAATCTTCTGGAAACTAATCACATactattttgtttgtatttttactgtttataaccTGATAAGAACCACACTGACCACATATGATAAtcttatttgtgtttgtgtgtaagcaTTTCATATCTTAAATGAATATCAATGACATAAACAGTGTCCTTAGGTTTTTGTCCTGAACCGCACTCTGAAACCTGAGACTTGATCCACACCCAGAGATTCAATACATAAGTTGGATTTGAACCCAGAGACCAACACTCCATTGGCACCCACAGATTTGAGACTCAACTCACACTCAGTTACTTGTAACTCGACTGGCACCCAGAGATTGAGACTCAACTCATACCTAAGGACTCAATACTCAATTTAGACGTTCAGTTGAAGACTGCAGACATTTAAACAGACttaaaactgaactaaaaccTGGACTGAATATCCCACTCAGAGGCTCAGAACTCAACCTCGATAACTCCCCTGCATCTTAGAGGCTCCAGACTCTTAGACTTCAAAGACTTATACCTAACTCAGTCTCAAAACTCAATTACACAAGAGTGGACCTGGCCTCAAACCCCAGACACGTGAGATTTAACACGAGTGGCGAGAAATTGATTGGTCATGACTTAAATTAATCGAACAGACTCAAATTCTCAACAACTAGACCCTGAATTCTGGGTATCACACAAAACCAGAGATTCAAGAACTCCCTTGGAAACTCAAACCGAAGAGACTTGAGACCCAATTCTGATTCAAACCTAAGTGAtttgagactcaactcagactcaaacCCAAGTGACCCCAGATTCTGATTTAAGGCCAAATGATTTGAGACTCAACTCAGGCTCAAGTCTCAACATTCTGATTCAAACCCAAGAGACTTGAAACTCAACTCAGAAGACTTAAAACTCTATTCAAATTTATACCCAGAGACTCTGGACTTTACTTGGACATTCACCCACAAACTCCAGCCTTAGCTGACATCCAGAGACTCCAGCCTTGACTGTCTATTACATCCCCACCAGTTGCCAATTACAGTAAGAAACCAACTGGGCCATAATAAAACCCAAACTACCCTACAGCAAACAAACTCCTCCCGAGACATATACACTCACACTGACACAAACAGTACATGCTctccaaacacaaacacacaatttagtgtatatatCTGGTGGTTGGACCTCAGAGACCTCacttgattggttgattggatTGGATGCCTATGTTCATTTGTGTTCATGAATTTCATCCTGAAATCATCTTATTTTTCCCTTCCTCCCCCTCCTCCACTGTCCACTCCAGATGCCCTGTGCTCAGGGGGCAGGTAATTGAAGTAGAGGAAGATTTCAGATACACATCGGCGCCATGATACATCTCAGTGGTTCCTGTCCTCAACatcaacaccacagaaaccacaaacacacacacagctcaccaCATCAAAGTGAACCTAGCATTAACAGTGCAAGCAAATGGAAGCAAAGCAggcacgcatacacacactctcaaataCACATATAGTCAGTTTCACAAGCCtagcaataaacacacacaca

Function

symbol description
cygb2 Enables nitrite reductase activity and oxygen binding activity. Predicted to act upstream of or within oxygen transport. Predicted to be located in cytoplasm. Is expressed in several structures, including digestive system; eye; female organism; heart; and integument. Orthologous to human CYGB (cytoglobin).
cygb Predicted to enable peroxidase activity. Predicted to be involved in response to oxidative stress. Predicted to be located in cytosol.

NR:

description
cytoglobin

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K21894 CYGB; cytoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252144.3 True 2521 mRNA 0.47 3 25489609 25513487

Neighbor

gene id symbol gene type direction distance location
sphk1 NA coding downstream 42707 25404994 ~ 25446902 (-)
aanat aanat coding downstream 160581 25321896 ~ 25329028 (-)
ten1 NA coding downstream 280298 25205651 ~ 25209311 (-)
cep95 NA coding downstream 373913 25096237 ~ 25115696 (-)
trnar-ccg_1 NA coding downstream 487853 25001684 ~ 25001756 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding upstream 65211 25578698 ~ 25580926 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding upstream 197744 25711231 ~ 26019447 (-)
LOC103030576 LOC108431845,LOC107696435,LOC108271496,LOC107560513,LOC107666154,LOC100690876 coding upstream 578164 26091651 ~ 26101521 (-)
eya2 eya2,LOC107666141,LOC106565282 coding upstream 638960 26152447 ~ 26206570 (-)
gcnt7 NA coding upstream 778928 26292415 ~ 26302395 (-)
G113753 NA non-coding downstream 15954 25470472 ~ 25473655 (-)
G113668 rhbdf2 non-coding downstream 167752 25318549 ~ 25321857 (-)
G113652 NA non-coding downstream 204066 25230816 ~ 25285543 (-)
G113649 NA non-coding downstream 269854 25216815 ~ 25219755 (-)
G113631 NA non-coding downstream 289491 25199179 ~ 25200118 (-)
G113756 NA non-coding upstream 16171 25529658 ~ 25529931 (-)
G113767 NA non-coding upstream 47808 25561295 ~ 25563405 (-)
LOC111193751 NA non-coding upstream 54601 25568088 ~ 25574469 (-)
G113771 NA non-coding upstream 69136 25582623 ~ 25582977 (-)
G113818 NA non-coding upstream 492035 26005522 ~ 26007995 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 1472808 24004549 ~ 24016801 (-)
G113304 NA other downstream 1588111 23901123 ~ 23901498 (-)
G113276 NA other downstream 1696148 23735954 ~ 23793461 (-)
LOC103040267 LOC108433657 other downstream 1925802 23559101 ~ 23563807 (-)
G113190 NA other downstream 1936545 23552349 ~ 23553064 (-)
ctsa NA other upstream 121817 25635304 ~ 25686577 (-)
G113826 NA other upstream 519408 26032895 ~ 26062284 (-)
G113888 NA other upstream 832653 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 2611749 28125236 ~ 28129856 (-)
G114270 NA other upstream 2834778 28348265 ~ 28361481 (-)

Expression


Co-expression Network