G113649


Basic Information

Item Value
gene id G113649
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25216815 ~ 25219755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153556
TTTAATACTCTTTATCAatctatgtatttatgtatgtatgcacTTATGCATTTAtggttgtattgttttgttaatCAAAAAGGTCACTCACAGCCTCCTGGCCACCACTTGATAGAGGTGACTGTTGGTGAATTCAGTACAAATTCCTGAGTGGAGGGATCGTAGGTGGCTGTGGTCTCAAGTCGGCGAATGTGAGTACCGTGACCCATCTCTGTCTGAGCATAAGTGCCGATGATCTGCAGGTTCCACGCAGGTGTGAAGAAGGTATCGAGCTGTGAGGGAGAAGCCTGGTTCAGCAATGTCGGCAGAAACATCCCCAGGTGAAGATCCAGGGGCTCGGAGGAACCACGGTGGACACATCTGGGGTCAGGTTTCAAGGATGAAAGAGTATGGAGGGGAATTTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050661 NADP binding molecular_function

KEGG:

id description
ko00380 Tryptophan metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU153556 True 406 lncRNA 0.47 2 25216815 25219755

Neighbor

gene id symbol gene type direction distance location
ten1 NA coding downstream 7504 25205651 ~ 25209311 (-)
cep95 NA coding downstream 101119 25096237 ~ 25115696 (-)
trnar-ccg_1 NA coding downstream 215059 25001684 ~ 25001756 (-)
c13h17orf58 cunh17orf58,LOC102781445,LOC105900187 coding downstream 216922 24985711 ~ 24999893 (-)
nol11 NA coding downstream 322597 24882893 ~ 24894218 (-)
aanat aanat coding upstream 102141 25321896 ~ 25329028 (-)
sphk1 NA coding upstream 185239 25404994 ~ 25446902 (-)
cygb cygb,cygb2,LOC107698994 coding upstream 269854 25489609 ~ 25513487 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding upstream 358943 25578698 ~ 25580926 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding upstream 491476 25711231 ~ 26019447 (-)
G113631 NA non-coding downstream 16697 25199179 ~ 25200118 (-)
G113547 NA non-coding downstream 231181 24983688 ~ 24985634 (-)
G113544 NA non-coding downstream 235070 24981423 ~ 24981745 (-)
G113542 bptf non-coding downstream 242267 24969227 ~ 24974548 (-)
G113535 bptf,LOC102781734 non-coding downstream 275925 24936756 ~ 24940890 (-)
G113652 NA non-coding upstream 11061 25230816 ~ 25285543 (-)
G113668 rhbdf2 non-coding upstream 98794 25318549 ~ 25321857 (-)
G113744 NA non-coding upstream 198869 25418624 ~ 25510087 (-)
G113753 NA non-coding upstream 250717 25470472 ~ 25473655 (-)
G113756 NA non-coding upstream 309903 25529658 ~ 25529931 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 1200014 24004549 ~ 24016801 (-)
G113304 NA other downstream 1315317 23901123 ~ 23901498 (-)
G113276 NA other downstream 1423354 23735954 ~ 23793461 (-)
LOC103040267 LOC108433657 other downstream 1653008 23559101 ~ 23563807 (-)
G113190 NA other downstream 1663751 23552349 ~ 23553064 (-)
ctsa NA other upstream 415549 25635304 ~ 25686577 (-)
G113826 NA other upstream 813140 26032895 ~ 26062284 (-)
G113888 NA other upstream 1126385 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 2905481 28125236 ~ 28129856 (-)
G114270 NA other upstream 3128510 28348265 ~ 28361481 (-)

Expression


Co-expression Network