G113668 (rhbdf2)


Basic Information

Item Value
gene id G113668
gene name rhbdf2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25318549 ~ 25321857 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153579
cttcttctgtaaagttgctattgTGGAGAgacaagttattttttttttttttggagtaacaTATTTCAGAATCCATAGACATGACCACAATTCccttttaattgatttaaggCACAGAGCACTGCTGTCCGTAAACGTAGAACATTTCCTATTCTGCAACAGAATAATGGCACGTTATGGTTTAAACATGTACAAAAGTAGcataagcacaaaaaaacatcaataataaatgatggtaataattacaataataatcaaCTGCATTAAAAAAGATACATTCTCTTTCACAATCTTTCACACGATGATAATCTATAAACCTGAACAATGTTCCGTGCTTCGTTTATAGACTAATCCTATAGACTAATGTTTCCATGCTGCCTGGAGGGCTGCGTCGGAGACGGACACATCGAACGATGGACTGTAAACCAGCTTTACTGCAGATTTAGGAGCTGGTGACTGAACATGACTAATCAAAGCCTCCTATTCTCAGTTCATCTCAATAAGACTGTAATCCTTTTCACAGTCAGTCATCGCTTTTCTCTCTCCGTAAGCCGGACACATACAGAGGAAGTTTTACTTCTAATCTCCAGCGCAGAGTGCAGGCCCACAGGAGGAGAACAGTGTTTCAGAGTGTTCTATAATATAGTGTGAACAAACCAAAAAGGACAGAGTACAGGCCTTTTCACACAGAGTCTGATTTTTTTCGGACGAGTTTTGGTACACACTGATAGACCGTTCCATTTAAAACACATCCTTGTTTCTACATTCTTTGTTCATTTTGTCATCTATATTTGACGTATAGAAGAATTATGCAGTTCTATTTTTTActtcttagcactgcagtgactgtacttacatggtggtggtgtatgaggtgttagtgtgtgttgtgctggtaacAGTGGAACAGACAGCAgcgctgctggagttttttaacACTATGTTTAATCACTCATTGTCCTCCACTCTGTTACACCCTCCTACCAAAAGCTtttgtgttggtcatcctctatctagtccttcatcagtggtcacagaACGCTGGTGGCTGGATATTTTCAGTTAGTGGATTATTCTCattccagcagtgacactaaggtgtttaaaaactccagcagcactgctgtggctGATAAGTGAAGCTAATAGTGTGAataatgagtgtagaaacaagaatgTGGTATTAATGAAGTGACCAGTCGGTATATTATTGATATTGTTTCACACTGAGCTCAAAACTAACAGAAGCTTATAATCTGATCAACACACTGACCATAAAAATACAGGTTggtaaaaaaactgaaatctcTGGCAGAACAGAGTtgaaaaccacattatgaagccaTTTTCGAAGTATGTCTAGGAGCATCTTTGATGTCAAAAAGAATCATGACCTATAGCTTCCCTCGCTAATGAGCACTTGTGTGGAGGAGGAAAATTTAAGTGAGCAGTAAAAAGTGAGCAGTATGCAGACAATGAGCAGAGAAACCAAAAGAGTGGACATTGATGAGACCTCTGGAGGtcctctctgctttttttttatacaaagtaAAGTTCCGCAATTATACTCTGTGTAAAAGGTTATATACAGTGTTGCAGAAGGGCATTAGATTTGCTTATCAAGGCACGTTTGAAGCAGACTAGGCCACTGTGATAGCTGGTATTACTGAATAAGATAAAGGGACACACAAACAGCTCAAGTTCCaccaattaataaaaaaaaacaaaaacaaaaaataaaaaagtcaaacatgtacacatacagtatatggctCAAGTCTTCCAGTTCATTTAAGGTAATGGATTGTCTTCGTGGCACGGCCAAACACGAGGGCGGACTTGGAGgaacacttaaaatattaaaaaaaagtatgacgTGTTGTGAATGTTACAATGTGAACACAAAGGACggcattataaagcatttaagGAAAATGCCACATATTTATGAAAATGTCTGTATTTCAGAAGTATAATTCGGTTGTTAAGATTTAGAAGAAAGTAATTTAGAGTGAATGGAAGCAAGTGTTGCAAGTGACCGATATCATGTTAGaggtgatgtgggaagagagcgccatctacccaccgcTGAAAAAGCAAGCCCAATCATGCTCTCTCAGGATGATAGTGGTACAGAGACTTTAAACCACAGAACCATTTTAGTTAGATCAAAGTCCTATTAAAGATTTAATGGGGAGGGTGAAGCTAGCATATGATTCCTTCAAGTCACACAAAGCAAGCTACCCTTCACTGGACAGCTCAACATGCTttgaggagaacactaactgcctGTTCTGCACTAACGTCCACTTACACATGCCCACATTGGTTAGTACTGCACTGTGTAATTGGGAGGGGTAGTTCTTTAGAAACTACCAAACCACTGATGATTTTCCTACATGTTTGCCATGATTAAAGGTTTAGTGAAAGGCAGCAAAGTTATCTGTTAGTAAAAATTAGGTTAATTTAAAGCAAGTGTTTGAACGGATTTAGAGATTAGTGTTtgacattaattatttttcatgtATTGTACCTGCAGAGAAAGGCATTTTGCAAATCTCACTCTTTGGCACTTGGAGTGCCAACAAAAATGACACGATAATGCCTTAAAAGAACCAACTCATAGGTCAACAGACCTACTAGAACCCACAAGATATAGTTCCTCTTCCCTGATGTTTTTCTTCAGGATGCTCACTTCCAAAAGCCAGTTCTCCTGATGTCCTTTCTCAGGACTCTGGTATCTACATGGCACCTGGAAGCTTCTCATTAGCACAGCTGCTACTACGCTAGTGCACCACATGGTCAATGTCGTATCGCTCACAGAACTTGCTGGTAAATGGGAGACAGGTGAGATGCTCCAGCCAGTACCAGTTGATGGGGTAGATGTAGAACCAGACGATGAGCGAGGAGAATAAGCCCACATAGACAATCAATGAGAGGATGATGAGCACCCGCTTGCGGTACTTGTCGAAGGTGCCGAAGGTAACATAAGGCAGGAAGGCGAAGGAGAGCAGCAGGCCGCTGAGGAAGCCGAAGATGTGGGCGATGTTGTCTATCCACGGCAGCAGGCcacagaagaagaggaagaggacgaTGCCGAGCAGCTTGAGGAAGGCTTTCCACGGTTTCTCCAACACCTGCCAGCCCTGGAACAGCTCCACGAACAAACACGCTAGCAGGCCGAACTGGGAGCCCGCTGGACCC

Function

symbol description
rhbdf2 Predicted to enable protein transporter activity. Predicted to be involved in negative regulation of protein secretion and regulation of epidermal growth factor receptor signaling pathway. Located in plasma membrane. Implicated in palmoplantar keratoderma-esophageal carcinoma syndrome.

NR:

description
PREDICTED: inactive rhomboid protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153579 True 3204 lncRNA 0.41 3 25318549 25321857

Neighbor

gene id symbol gene type direction distance location
ten1 NA coding downstream 109238 25205651 ~ 25209311 (-)
cep95 NA coding downstream 202853 25096237 ~ 25115696 (-)
trnar-ccg_1 NA coding downstream 316793 25001684 ~ 25001756 (-)
c13h17orf58 cunh17orf58,LOC102781445,LOC105900187 coding downstream 318656 24985711 ~ 24999893 (-)
nol11 NA coding downstream 424331 24882893 ~ 24894218 (-)
aanat aanat coding upstream 39 25321896 ~ 25329028 (-)
sphk1 NA coding upstream 83137 25404994 ~ 25446902 (-)
cygb cygb,cygb2,LOC107698994 coding upstream 167752 25489609 ~ 25513487 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding upstream 256841 25578698 ~ 25580926 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding upstream 389374 25711231 ~ 26019447 (-)
G113652 NA non-coding downstream 33006 25230816 ~ 25285543 (-)
G113649 NA non-coding downstream 98794 25216815 ~ 25219755 (-)
G113631 NA non-coding downstream 118431 25199179 ~ 25200118 (-)
G113547 NA non-coding downstream 332915 24983688 ~ 24985634 (-)
G113544 NA non-coding downstream 336804 24981423 ~ 24981745 (-)
G113744 NA non-coding upstream 96767 25418624 ~ 25510087 (-)
G113753 NA non-coding upstream 148615 25470472 ~ 25473655 (-)
G113756 NA non-coding upstream 207801 25529658 ~ 25529931 (-)
G113767 NA non-coding upstream 239438 25561295 ~ 25563405 (-)
LOC111193751 NA non-coding upstream 246231 25568088 ~ 25574469 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 1301748 24004549 ~ 24016801 (-)
G113304 NA other downstream 1417051 23901123 ~ 23901498 (-)
G113276 NA other downstream 1525088 23735954 ~ 23793461 (-)
LOC103040267 LOC108433657 other downstream 1754742 23559101 ~ 23563807 (-)
G113190 NA other downstream 1765485 23552349 ~ 23553064 (-)
ctsa NA other upstream 313447 25635304 ~ 25686577 (-)
G113826 NA other upstream 711038 26032895 ~ 26062284 (-)
G113888 NA other upstream 1024283 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 2803379 28125236 ~ 28129856 (-)
G114270 NA other upstream 3026408 28348265 ~ 28361481 (-)

Expression


Co-expression Network