LOC111193751


Basic Information

Item Value
gene id LOC111193751
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25568088 ~ 25574469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153725
AAAACAGTTTAACACACAAGGTGGTTTATTGGTCCATTGTCTTCATACATtacaacagacagacacagaacaGAGGAGAACACTGCTAATACGCAGTGCATGGAGCCTTGGTCTCACTGCATGTGTGCGAATGAAGGAATGTACCAGAGATCATTAGAAACATTATCTCGAGATCTCTGTTTACTGTGGTTTCACCGAACCTGTGAAACCATGAAGACCATAACTGTAAACTCCAGAGCACAGTGACCCAGCATCCACCCATTAATTAACACCCAACATtcgaaattattttttgtttgtttgtttcaatgAACTAAAACAAACAGATACATTGGAGGGCATTTGAGAACCATGTAAAGAGGAGGAGAACTTCCTTCCTTATCCAAGGTTTAGAATGTCCTAAATAATGTGaatgaagaacaaaaaaaggcAACTGACTATTTAAAACTTGTAGTTTCTCCATTCACAATGTTATATAGTGTTCACTTCCAGGTTGAATGAGGGAAGTAGActtaagaacagtgtgaatggatTAAGTGAATAGTGTGAATAAAGGAAGCACGTGTTGGAACAGTGTGACTGAAGGAGAACACTATAAAAAGTGAACACAGTGAATTATATATGTTTCGTTCTAGAACAGTGGTTTCCAAACTTATttgccagattttttttttagtgctatGGTTTTTCAGCTCTAATGTACGACCTTTAACTCAGTAAGGGTTTCTTCGTTAACTGATTACACCTGTTCCAACTAATCAGTTAACGAAGAAACCCTTACTGAGTTAAAGGTCGTACATTAGAGCTGGGGGAACGTTAAAAAGCACTTTCCCAGACAtgaattaaaggagaaatccggtgtgaagTGGACTTGGATTTTGTGAAACATGAACTGTTTATACCCACAGTACCTTAAGGTAGTTCACTGGGTgctgccatcttgaaattaagtcaagaTAAATTTACTGACTAGCACGAACGAATTGGTATCATAGGATAACAGACTGCATGAACCATTACCTCCATGGAAATGCATCATTGCTAAAAATATCTTTAGAATATTCATTCATATTCACCCAGAGAACAACCTCAAgctactgtgtgtataaaaaaagtttcttaaTAAACAACATGCATGTgaacttttaaagttctaaCTGGCTTGTTtcaaatgtcagggccctcagaattctaccattAAAGTGTGGAGcaactttgagcttgttaatggtgtaaaaatagccatttctttgcaCAGGCAacgctagcattgtaagcctgtttgctgttttggaatgctggggCTGAACGGAGGTGGATGTTTCACttcaccccaagtccatttctcTAAAGATTTCTCCGTTATGCCTTATGTGAATGTGTGAAGATTCTAGGACACCATGGGTAGAGGATTAGAGGAATAACATTGCAGAACAGAGTGAAGGGATGAAGAACATTCCAAAACACTAAATGGACAACATGAATGACTGAAGACAATTCTAGAAAAGTGTAAATAGACAAGGAGGTGAATTGGTGACAAATATTCTAAAACTGTGTGAATGGAGGAAAACACTGTAGAATATTGTGAATGGAGGAAAGAACATTCTAAGAGAGAAACACACCAACCAGGCATCTGCGATCGTTGGTGGTTACTGGTGTGAAGGATATGACGATATAATGCTGTTATGAAGATTAACTTGATTTACTGACCAGCAACAAGTTCAGTAATTCAGAAGATGTTTAGAAGTGGTTTCTGTGTGGCACAGCATCGTTTACTTCAGCCTGTGCTCTGTACTTTAGAGTAGGACTCCAAATGGAATGCTCCATCATCTCCAGCTCCTTCTCTTTCCATACCTGTGGAATACTAAGACAGATATACTGATAATTAGAGGTCTGTGCTGAGCAAAGCACTGCAAGCATGAATTTCCTCATGAGGAAGGTTTTAATACTGTCATGCTTTTAAGAAAACAGGCCCCGGGTCAGTGGCTGGTCTCCAAGTACTGCACAGAGTTACTGTCCATCCTTCAAATCCCAGAccaccacaaaaaaacaaagacccCAAACTGGTCCCGAATCAGCCGAGGGACTTCCTAAAGCCTGGGGCTAGTCATCCACAGTGACGTTGCGGAACAGGTAGGCCATGGACTCGCCGTTGTGGATGCGCCGGATGGCCTCGGCTAAAATCATACTGACGTCCACTGTTTTGATCTTGGGACACTGTAGCTTCTGGACCTCATGGGGCACAGTGTTGGTCACAACCAC
>TU153730
ACTGAGTTAAAGGTCGTACATTAGAGCTGGGGGAACGTTAAAAAGCACTTTCCCAGACAtgaattaaaggagaaatccggtgtgaagTGGACTTGGATTTTGTGAAACATGAACTGTTTATACCCACAGTACCTTAAGGTAGTTCACTGGGTgctgccatcttgaaattaagtcaagaTAAATTTACTGACTAGCACGAACGAATTGGTATCATAGGATAACAGACTGCATGAACCATTACCTCCATGGAAATGCATCATTGCTAAAAATATCTTTAGAATATTCATTCATATTCACCCAGAGAACAACCTCAAgctactgtgtgtataaaaaaagtttcttaaTAAACAACATGCATGTgaacttttaaagttctaaCTGGCTTGTTtcaaatgtcagggccctcagaattctaccattAAAGTGTGGAGcaactttgagcttgttaatggtgtaaaaatagccatttctttgcaCAGGCAacgctagcattgtaagcctgtttgctgttttggaatgctggggCTGAACGGAGGTGGATGTTTCACttcaccccaagtccatttctcTAAAGATTTCTCCGTTATGCCTTATGTGAATGTGTGAAGATTCTAGGACACCATGGGTAGAGGATTAGAGGAATAACATTGCAGAACAGAGTGAAGGGATGAAGAACATTCCAAAACACTAAATGGACAACATGAATGACTGAAGACAATTCTAGAAAAGTGTAAATAGACAAGGAGGTGAATTGGTGACAAATATTCTAAAACTGTGTGAATGGAGGAAAACACTGTAGAATATTGTGAATGGAGGAAAGAACATTCTAAGAGAGAAACACACCAACCAGGCATCTGCGATCGTTGGTGGTTACTGGTGTGAAGGATATGACGATATAATGCTGTTATGAAGATTAACTTGATTTACTGACCAGCAACAAGTTCAGTAATTCAGAAGATGTTTAGAAGTGGTTTCTGTGTGGCACAGCATCGTTTACTTCAGCCTGTGCTCTGTACTTTAGAGTAGGACTCCAAATGGAATGCTCCATCATCTCCAGCTCCTTCTCTTTCCATACCTGTGGAATACTAAGACAGATATACTGATAATTAGAGGTCTGTGCTGAGCAAAGCACTGCAAGCATGAATTTCCTCATGAGGAAGGTTTTAATACTGTCATGCTTTTAAGAAAACAGGCCCCGGGTCAGTGGCTGGTCTCCAAGTACTGCACAGAGTTACTGTCCATCCTTCAAATCCCAGAccaccacaaaaaaacaaagacccCAAACTGGTCCCGAATCAGCCGAGGGACTTCCTAAAGCCTGGGGCTAGTCATCCACAGTGACGTTGCGGAACAGGTAGGCCATGGACTCGCCGTTGTGGATGCGCCGGATGGCCTCGGCTAAAATCATACTGACGTCCACTGTTTTGATCTTGGGACACTGTAGCTTCTGGACCTCATGGGGCACAGTGTTGGTCACAACCACCTGAGAAGAACCACAACCAGGACAAACCAGTTAAAATCATAGCAATGAAAGCAGCATGAGCAAACAAAGCAAATATATGAACCAGGTCGGTCAtgataaaaaatttttttttggatgattaGCCCAAAAcatattgcaataaacaatattattgtcagtTTCAAATTAATGTTATTCCAAAAGATGTAACTATAATTTAAtagcataatattaatgcatttccacatttattttgAAGAGCAATGAAGCAGAGTtataattattaagaatattaaattagacttatttatttatttttgctgaccaTACGCCTTTTGTATCCATACGCCTTATATGAAGGGTGGGTTTGGTGTTTAAAACAAATAGTGTTATGAAGCTAAatcaaacctttatttttacaaatgtacatttatttttattagtttataggaaataaagtttccatttcccatttattaaaacaatttaatttgacGACACAGGATGATCAGTTAAAGGGGggagtgtgtttctgtgtgatgACATGATAGAGCAGAGTAAATGCAGTGTTACGGCTAAATGACTCTtcaaactaagatttttcagtGCACACTTTAAACAGagggctatgagaatcactggtaagatggcggCACAAGCAAAGACTAAAGAAACCCCATAAATATGAGTATTTTCCTCGTTAAAAATTATGCCAATTTTACCattgtttaatgtaaaatgtagtttcaatgttttatggtcatTTTCTTCAAAGAAAGCATATAAAGAAAATCACTAGTAGTTTATCTCTGTATCTAGCTGTATTAgcccttaaatggtgcaacagacacaGACGGCAGAGGCTGAAGCATTTAAGGTCCCCATCATAGAGGAATGAAAGAAATGACAATATTAATTTACTTCTGCAACACCTGCTTCCTTCCTGAAGACAAAGGTAAAGGTAACTAGgtaagcagcagctaggttgctgaattTTAGCGTGCCACTGCTATAGCTAGCTATATCTGTATCGGGTGCTTTAAGGGTTGTCCCCATTCTTAGGGGGGTGGTTTTACTAATTTCCCTTGTGATTCTGTTCCAGGGGAAGGCTTATACCCGTAAACAAGAAGTACAAAAGAGAAGAGATATTTTAGGTCAGAATcctttcaatttttttccaaaaggtGCATAAACAGAGGAGGATCACATTCACTTCTTGGTCCCCTTTTTGGACCATTTTTTATCATCAACATTccataaaaacagaaaagacaCTTGTAGATTTATTGGTGTGTTaagacagtaaatataaaagtcCATATATGTGTAGCAATAATGGTGGCATCTGTATCTATTGTTAACTTACAGACTTGCAGACAATGGTGTACATCAATGGAGCTTGGTTTCAGACCACACCCCACTCTGAATGGCTCTGCTTACATctgatatttgtttatattatgCCGAAATGTTCAATTCATTTGCATGATGCAAAGAAGTACCTGCAGCGACTCTGACTTTTGAATACATGTACAGCCCTAAACAGCACACTAAATCTTTCTAAGACTGTAATGAAATTCATTTTCTACTGTAGTTAAAacctaataaatgaaataaatgtaattaaaagtattaaaaagtgtGAACTCTGCTTTAATctctttgctctttttttcttttatcatatttaatttGATCCTTGGAAACTGTAGCTAACATCCAGCTGTAAAAGATTATTTTTATCTGCACTATACACAGCATGGTTAAGCAACATTACTGTAGCACCCATTGCTATACTGATCATTTCCTCCATATAGCATCCACCTATAACAAAAACCCAGTTTACTAATAACAGAGTATTAGAGTTGTGTTTTAATTCTG
>XR_002650694.1
tatataacacaCCTCAGTTCCTGTGCTGATAGATGCTGCAGAGTTTCCACTGCAGATCTATAGGGGAACTTCTGGATCTCAGATGTTGGTTTTTGTGGttacttttacttctacttGAGTCGTGACTGAAGTAACAGTACTTTCACTGTGGGTTCAGGCTTCTCCATACACCTCCGGTCTGTGCAGGTAGGTGTACTGTAACTTTGCCTTAAATGGCACGCTCCCTTTCATaaagcccacacacacacacacacacaaatgcccCCACATATAGCAGGCCCTGTCCATGTGTTTCCCTTTTCCTGTCTCAGCTGTGATAGGGGCAGCATTGTCTCACAGGAGGAAGTGGCCGAGAGTCGGTTGCTCTGTAGTTCCTCTTTGGCTCATGTTAATACAGAGACATTTCTTCCTCACCATGCACATTTCACTCGCTGCACCTCGGTACACAGGGAACCAGCCTCTTCTTATGGCCACCACACTGGGGGAAGGCTTATACCCGTAAACAAGAAGTACAAAAGAGAAGAGATATTTTAGGTCAGAATcctttcaatttttttccaaaaggtGCATAAACAGAGGAGGATCACATTCAGAAAGTTGAGGCACAATAGTCCCCAAACAAAGTTTTTTCCCCTTCTTGGTCCCCTTTTTGGACCATTTTTTATCATCAACATTccataaaaacagaaaagacaCTTGTAGATTTATTGGTGTGTTaagacagtaaatataaaagtcCATATATGTGTAGCAATAATGGTGGCATCTGTATCTATTGTTAACTTACAGACTTGCAGACAATGGTGTACATCAATGGAGCTTGGTTTCAGACCACACCCCACTCTGAATGGCTCTGCTTACATctgatatttgtttatattatgCCGAAATGTTCAATTCATTTGCATGATGCAAAGAAGTACCTGCAGCGACTCTGACTTTTGAATACATGTACAGCCCTAAACAGCACACTAAATCTTTCTAAGACTGTAATGAAATTCATTTTCTACTGTAGTTAAAacctaataaatgaaataaatgtaattaaaagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153725 False 2262 lncRNA 0.40 2 25569989 25572286
TU153730 True 3343 lncRNA 0.37 2 25568088 25571471
XR_002650694.1 False 1053 lncRNA 0.41 2 25568337 25574469

Neighbor

gene id symbol gene type direction distance location
cygb cygb,cygb2,LOC107698994 coding downstream 54601 25489609 ~ 25513487 (-)
sphk1 NA coding downstream 121186 25404994 ~ 25446902 (-)
aanat aanat coding downstream 239060 25321896 ~ 25329028 (-)
ten1 NA coding downstream 358777 25205651 ~ 25209311 (-)
cep95 NA coding downstream 452392 25096237 ~ 25115696 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding upstream 4229 25578698 ~ 25580926 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding upstream 136762 25711231 ~ 26019447 (-)
LOC103030576 LOC108431845,LOC107696435,LOC108271496,LOC107560513,LOC107666154,LOC100690876 coding upstream 517182 26091651 ~ 26101521 (-)
eya2 eya2,LOC107666141,LOC106565282 coding upstream 577978 26152447 ~ 26206570 (-)
gcnt7 NA coding upstream 717946 26292415 ~ 26302395 (-)
G113767 NA non-coding downstream 4683 25561295 ~ 25563405 (-)
G113756 NA non-coding downstream 38157 25529658 ~ 25529931 (-)
G113744 NA non-coding downstream 58001 25418624 ~ 25510087 (-)
G113753 NA non-coding downstream 94433 25470472 ~ 25473655 (-)
G113668 rhbdf2 non-coding downstream 246231 25318549 ~ 25321857 (-)
G113771 NA non-coding upstream 8154 25582623 ~ 25582977 (-)
G113818 NA non-coding upstream 431053 26005522 ~ 26007995 (-)
LOC111193689 NA non-coding upstream 501570 26076039 ~ 26076705 (-)
G113865 NA non-coding upstream 688393 26262862 ~ 26263175 (-)
G113887 tfap2c,LOC102234024 non-coding upstream 769702 26344171 ~ 26386866 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 1551287 24004549 ~ 24016801 (-)
G113304 NA other downstream 1666590 23901123 ~ 23901498 (-)
G113276 NA other downstream 1774627 23735954 ~ 23793461 (-)
LOC103040267 LOC108433657 other downstream 2004281 23559101 ~ 23563807 (-)
G113190 NA other downstream 2015024 23552349 ~ 23553064 (-)
ctsa NA other upstream 60835 25635304 ~ 25686577 (-)
G113826 NA other upstream 458426 26032895 ~ 26062284 (-)
G113888 NA other upstream 771671 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 2550767 28125236 ~ 28129856 (-)
G114270 NA other upstream 2773796 28348265 ~ 28361481 (-)

Expression


Co-expression Network