RNA id: TU153730


Basic Information

Item Value
RNA id TU153730
length 3343
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC111193751
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25568088 ~ 25574469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTGAGTTAAAGGTCGTACATTAGAGCTGGGGGAACGTTAAAAAGCACTTTCCCAGACAtgaattaaaggagaaatccggtgtgaagTGGACTTGGATTTTGTGAAACATGAACTGTTTATACCCACAGTACCTTAAGGTAGTTCACTGGGTgctgccatcttgaaattaagtcaagaTAAATTTACTGACTAGCACGAACGAATTGGTATCATAGGATAACAGACTGCATGAACCATTACCTCCATGGAAATGCATCATTGCTAAAAATATCTTTAGAATATTCATTCATATTCACCCAGAGAACAACCTCAAgctactgtgtgtataaaaaaagtttcttaaTAAACAACATGCATGTgaacttttaaagttctaaCTGGCTTGTTtcaaatgtcagggccctcagaattctaccattAAAGTGTGGAGcaactttgagcttgttaatggtgtaaaaatagccatttctttgcaCAGGCAacgctagcattgtaagcctgtttgctgttttggaatgctggggCTGAACGGAGGTGGATGTTTCACttcaccccaagtccatttctcTAAAGATTTCTCCGTTATGCCTTATGTGAATGTGTGAAGATTCTAGGACACCATGGGTAGAGGATTAGAGGAATAACATTGCAGAACAGAGTGAAGGGATGAAGAACATTCCAAAACACTAAATGGACAACATGAATGACTGAAGACAATTCTAGAAAAGTGTAAATAGACAAGGAGGTGAATTGGTGACAAATATTCTAAAACTGTGTGAATGGAGGAAAACACTGTAGAATATTGTGAATGGAGGAAAGAACATTCTAAGAGAGAAACACACCAACCAGGCATCTGCGATCGTTGGTGGTTACTGGTGTGAAGGATATGACGATATAATGCTGTTATGAAGATTAACTTGATTTACTGACCAGCAACAAGTTCAGTAATTCAGAAGATGTTTAGAAGTGGTTTCTGTGTGGCACAGCATCGTTTACTTCAGCCTGTGCTCTGTACTTTAGAGTAGGACTCCAAATGGAATGCTCCATCATCTCCAGCTCCTTCTCTTTCCATACCTGTGGAATACTAAGACAGATATACTGATAATTAGAGGTCTGTGCTGAGCAAAGCACTGCAAGCATGAATTTCCTCATGAGGAAGGTTTTAATACTGTCATGCTTTTAAGAAAACAGGCCCCGGGTCAGTGGCTGGTCTCCAAGTACTGCACAGAGTTACTGTCCATCCTTCAAATCCCAGAccaccacaaaaaaacaaagacccCAAACTGGTCCCGAATCAGCCGAGGGACTTCCTAAAGCCTGGGGCTAGTCATCCACAGTGACGTTGCGGAACAGGTAGGCCATGGACTCGCCGTTGTGGATGCGCCGGATGGCCTCGGCTAAAATCATACTGACGTCCACTGTTTTGATCTTGGGACACTGTAGCTTCTGGACCTCATGGGGCACAGTGTTGGTCACAACCACCTGAGAAGAACCACAACCAGGACAAACCAGTTAAAATCATAGCAATGAAAGCAGCATGAGCAAACAAAGCAAATATATGAACCAGGTCGGTCAtgataaaaaatttttttttggatgattaGCCCAAAAcatattgcaataaacaatattattgtcagtTTCAAATTAATGTTATTCCAAAAGATGTAACTATAATTTAAtagcataatattaatgcatttccacatttattttgAAGAGCAATGAAGCAGAGTtataattattaagaatattaaattagacttatttatttatttttgctgaccaTACGCCTTTTGTATCCATACGCCTTATATGAAGGGTGGGTTTGGTGTTTAAAACAAATAGTGTTATGAAGCTAAatcaaacctttatttttacaaatgtacatttatttttattagtttataggaaataaagtttccatttcccatttattaaaacaatttaatttgacGACACAGGATGATCAGTTAAAGGGGggagtgtgtttctgtgtgatgACATGATAGAGCAGAGTAAATGCAGTGTTACGGCTAAATGACTCTtcaaactaagatttttcagtGCACACTTTAAACAGagggctatgagaatcactggtaagatggcggCACAAGCAAAGACTAAAGAAACCCCATAAATATGAGTATTTTCCTCGTTAAAAATTATGCCAATTTTACCattgtttaatgtaaaatgtagtttcaatgttttatggtcatTTTCTTCAAAGAAAGCATATAAAGAAAATCACTAGTAGTTTATCTCTGTATCTAGCTGTATTAgcccttaaatggtgcaacagacacaGACGGCAGAGGCTGAAGCATTTAAGGTCCCCATCATAGAGGAATGAAAGAAATGACAATATTAATTTACTTCTGCAACACCTGCTTCCTTCCTGAAGACAAAGGTAAAGGTAACTAGgtaagcagcagctaggttgctgaattTTAGCGTGCCACTGCTATAGCTAGCTATATCTGTATCGGGTGCTTTAAGGGTTGTCCCCATTCTTAGGGGGGTGGTTTTACTAATTTCCCTTGTGATTCTGTTCCAGGGGAAGGCTTATACCCGTAAACAAGAAGTACAAAAGAGAAGAGATATTTTAGGTCAGAATcctttcaatttttttccaaaaggtGCATAAACAGAGGAGGATCACATTCACTTCTTGGTCCCCTTTTTGGACCATTTTTTATCATCAACATTccataaaaacagaaaagacaCTTGTAGATTTATTGGTGTGTTaagacagtaaatataaaagtcCATATATGTGTAGCAATAATGGTGGCATCTGTATCTATTGTTAACTTACAGACTTGCAGACAATGGTGTACATCAATGGAGCTTGGTTTCAGACCACACCCCACTCTGAATGGCTCTGCTTACATctgatatttgtttatattatgCCGAAATGTTCAATTCATTTGCATGATGCAAAGAAGTACCTGCAGCGACTCTGACTTTTGAATACATGTACAGCCCTAAACAGCACACTAAATCTTTCTAAGACTGTAATGAAATTCATTTTCTACTGTAGTTAAAacctaataaatgaaataaatgtaattaaaagtattaaaaagtgtGAACTCTGCTTTAATctctttgctctttttttcttttatcatatttaatttGATCCTTGGAAACTGTAGCTAACATCCAGCTGTAAAAGATTATTTTTATCTGCACTATACACAGCATGGTTAAGCAACATTACTGTAGCACCCATTGCTATACTGATCATTTCCTCCATATAGCATCCACCTATAACAAAAACCCAGTTTACTAATAACAGAGTATTAGAGTTGTGTTTTAATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153721 lncRNA downstream 4683 25561295 ~ 25563405 (-) True G113767
TU153710 lncRNA downstream 38157 25529658 ~ 25529931 (-) True G113756
TU153694 lncRNA downstream 58001 25418624 ~ 25510087 (-) True G113744
TU153703 lncRNA downstream 94433 25470472 ~ 25473655 (-) True G113753
TU153579 lncRNA downstream 246231 25318549 ~ 25321857 (-) True G113668
TU153731 lncRNA upstream 11152 25582623 ~ 25582977 (-) True G113771
TU153744 lncRNA upstream 63833 25635304 ~ 25686577 (-) False ctsa
TU153788 lncRNA upstream 434051 26005522 ~ 26007995 (-) True G113818
XR_002650626.1 lncRNA upstream 504568 26076039 ~ 26076705 (-) True LOC111193689
TU153853 lncRNA upstream 691391 26262862 ~ 26263175 (-) True G113865
XM_007252144.3 mRNA downstream 54601 25489609 ~ 25513487 (-) True cygb
XM_007252143.3 mRNA downstream 121186 25404994 ~ 25446902 (-) True sphk1
XM_022675598.1 mRNA downstream 239060 25321896 ~ 25329028 (-) True aanat
XM_007252138.3 mRNA downstream 358777 25205651 ~ 25209311 (-) True ten1
XM_007252134.3 mRNA downstream 452392 25096237 ~ 25115696 (-) True cep95
XM_007252151.3 mRNA upstream 7227 25578698 ~ 25580926 (-) True LOC103025798
XM_022675087.1 mRNA upstream 99994 25671465 ~ 25686019 (-) True ctsa
XM_022675607.1 mRNA upstream 139760 25711231 ~ 26019447 (-) True LOC103035347
XM_022675609.1 mRNA upstream 139760 25711231 ~ 25889662 (-) False LOC103035347
XM_022675608.1 mRNA upstream 139760 25711231 ~ 25889662 (-) False LOC103035347
trnar-ccg_1 other downstream 566332 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 1666590 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 1774627 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 2015024 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 2256102 23299228 ~ 23311986 (-) False LOC103039435
TU153804 other upstream 461424 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 774669 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 1745937 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 2553765 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 2776794 28348265 ~ 28361481 (-) True G114270

Expression Profile