RNA id: XM_022675609.1


Basic Information

Item Value
RNA id XM_022675609.1
length 3722
RNA type mRNA
GC content 0.55
exon number 26
gene id LOC103035347
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25711231 ~ 26019447 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagagaggagacgacgagaagaagagaagggaaaaaagcgcactctctttctccattGGTGTCGTCCTTCCTCTCAGCTCTGGCACGGGGAACGAAAGGAGGACAGGAGGGTGAATCTGTCCAtctttccccctctctttctcacgcGCGCGTGAGTGGAGGTGTGcgtttttcctctctctctctctctctctgggagcGGAGGACAGTTTGGAGCAGTGGAGCGGGGAGAAGCGGAGCGCCGGGATGCTCAACAACCTGACCGAGTGTGAGGAGGGAGAGGGGGGAGCCAACAGCCAAGGAGATGGTAACCCCAAGGAGAGCAGTCCTTTCATCAACAGCAGCGATCCAGAGAAGAGCCAGCAGTATGACGGCAAAAACATGGCCCTGTTCGAGGAGGAGATGGACACTAGCCCCATGGTATCGTCTCTGCTCAGCAGCCTCGCCAACTACTCCAACCTGCCACAGGGCAGCAAGGAGCATGAGGAGGCTGAGAACAACGAAGGAACCCGCAAGAAACCTgtacagGCTCCGCGGATGGGCACGCTGATGGGAGTGTATCTCCCTTGTCTGCAGAATATTCTCGGTGTGATTCTATTTCTGAGAATGACCTGGATGGTGGGCATCGGAGGAGTCATCGAGGCTTTCGTCATCGTCCTCATGTGCTGCTCCACGACCATGTTGACTGCAATCTCGATGAGTGCCATCGCCACCAACGGAGTAGTGCCAGCTGGAGGCTCCTACTACATGATCTCTCGCTCGCTTGGTCCTGAGTTCGGAGGTGCTGTGGGGATTTGCTTTTACCTGGGGACCACCTACGCTGGAGCCATGTACATCCTGGGCTGTATCGAAATCTTACTGatcTATATTGTGCCACAAGCCGCCATCTTTAAGATGGAGGGTTTGGAGGGCTCGGAGGCGGAGGCAGCCATGTTGAATAACATGCGTGTGTATGGATCTCTAGTGCTGACCTTTATGGCGATAGTGGTGTTTGTGGGGGTGAGGTATGTCAACAAGCTGGCGCTGGTGTTTCTGGCCTGCGTTATCTCCTCCATCCTGGCCGTCTACGCTGGGGTCATCAAGACCGCCTTTGAGCCCCCCTTGTTCCCAGTGTGCACACTGGGAAACCGGACCTTGGTGTGGAAGGGCTTTGACGTGTGTGCCAAAGTGATAGAGAGGGACAATGCCACGGTCACCACCAAACTCTGGAGAATGTTCTGCGACTCTGAGTTCCTCAACGCCACCTGCGACACCTACTTCTCCAACAACAACGTGACGGAGATACAGGGCATCCCTGGGGTCACCAGTGGTATTCTTAAAgAGAACCTGTTCAGTACGTATCTGGAAAAGGGGATGTTTCTGGAGAAGAAGGGTCTTTCCACCTACCTGGAGCCAGATGAGATTCCCACTAACTCCAACCGCTATGTACTGGCTGACATCAGCACCTTCTTCACCATGCTGGTTGGGATTTATTTCCCTTCTGTCACAGgtatAATGGCTGGCTCTAACCGCTCTGGTGATCTGCGGGATGCTCAGAAGTCCATTCCCATCGGTACCATTTTGGCCATTACCACTACCTCCTTCATCTACATGTCCAGCGTGGTGCTGTTTGGCGCCTGCATTGAGGGAACAGTGCTGAGGGATAAGTTTGGTGAGGCTGTGAGGGGGAATCTTGTGATAGGAACGTTAGCGTGGCCGTCGCCGTGGGTCATCGTGTTCGGCTCCTTCTTCTCCACCTGTGGAGCCGGACTTCAGAGTCTGACGGGTGCTCCACGTCTTCTGCAGGCCATAGCCAGGGACGGAATAGTGCCGTTCCTGAGAgtaTTCGGTCATGGCAAAGCCAACGGGGAGCCCACCTGGGCTTTACTTCTGACGGCCGTTATCTGTGAGAGTGGAATCCTCATTGCCTCTCTGGACTCAGTGGCACCAATCCTCTCAATGTTCTTCTTGATGTGCTACATGTTTGTGAACCTGGCATGTGCCTTACAGACTCTACTGAGGACCCCCAACTGGAGACCCCGCTTCAAGTTCTACCACTGGGCTTTGTCGTTCCTAGGCATGAGCCTGTGTCTCTCGCTCATGTTCATCTGCTCCTGGTACTACGCCATCGTTGCCATGGCGATCGCCAGCTGTATCTACAAGTATATCGAGTTTCGGGGGGCGGAGAAGGAGTGGGGTGACGGGATCCGGGGGCTGTCTTTGAGCGCGGCACGTTTTGCCCTCATGAGGCTGGAGGAGGGGCCGCCTCACACCAAGAACTGGAGgcCCCAGATTTTGGTGCTGGTCAATGTGGACGCAGAGCAGAATGTTGAGCAGCCTCGTCTGCTCTCTCTGACCAATCAGCTGAAGGCAGGGAAAGGTCTGACCATAGTGGGAACAGCACTGGCTGGAACCTTCCTGGAAAATCACCCTCAAGCCCAACAAGCAGAACAGTCCTTGAAGAAGATAATGGAGACAGAGAAGGTGAAGGGATTCTGCCAGGTGGTGGTCTCCTCCAACATCCGTGATGCCACCTCTCACCTGGTCCAGGCCAGCGGGCTGGGCGGCCTGCAGCACAACACTGTGCTGGTCAGCTGGCCCCGCAACTGGAAGCAGGCTGAGGACCACCAGCTCTGGAGGAACTTCATTGAACTGGTGAGAGAGACCACTGCCGCAAGCAAGGCCCTGCTCGTGCCCAAGAACATCGCTGCCTTCCCATCTAATGGCGAGCGCTTTACTGAGGGTCATATCGATGTGTGGTGGATTGTCCATGATGGAGGCATGCTCATGCTCCTGCCATTCCTCCTGCGCCAAAACAAGGTGTGGAGGAAGTGCAAGATGCGCATCTTCACTGTGGCCCAGATGGACGATAACTCTATTCAGATGAAGAAGGACCTGACCACCTTCCTTTACCATCTACGTATAGATGCccaggtggaggtggtggagatGCAAGACAGTGATATCTCAGCCTACACCTATGAGAAGACTCTAGTGATGGAGCAGCGCTCTCAGATCCTCAAGCAGATCAACCTCACTAAGACCGAGCGCGAGCGTGAGATCCAGAGCATTACTGATAGTTCCCGTGGCTCGATTCGTCGGAAGAACCCAGCAGCAGTCAACACCCAGCTGAGTGTAACTGAAGAACCAGCGGCCAGCAGCAAAGAGGAGAAACCAGAGGAGGAGGAACAGCTCATCCACGACAAGAGCACCAATCCTCCCACCCCCGCCACCCCCCAGTCCCCGGCCGCCGAGGCCGAGACCCCCAGCACTGTCGTCCAGATGACCTGGACCGAGGCCAAGTGTGACGGAGAGCAGGCCAAGCCTCTTGGAGCCACCACACCTGAGGCCATCAAGGATCTCTTCAACATGAAGCCAGAGTGGGAGAATCTaaaCCAGTTCAACGTTAGGCGCATGCACACTGCTCTCAGACTCAATAGTGAAATTGTGAAGAAATCCCAGGAAGCCAAGTTAGTCCTGCTCAACATGCCCGGACCACCCAAGAACAGGACTGGTGACGAGAACTACATGGAGTTCCTTGAAGTCCTAACCGAGGGTCTCAATCGGGTCCTCCTCGTGCGTGGAGGAGGTCGTGAGGTCATCACCATCTACTCTTGAAAGACCAGCCTGCATCACTTCATCCCATTCCCTCATTCCCCAACCTGCAGAATCCCTACAAACGTCACATTCTCACACACCCGGCCCAAAACTCCCAAAAAACTCCCAAAAACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153744 lncRNA downstream 24654 25635304 ~ 25686577 (-) False ctsa
TU153731 lncRNA downstream 128254 25582623 ~ 25582977 (-) True G113771
XR_002650694.1 lncRNA downstream 136762 25568337 ~ 25574469 (-) False LOC111193751
TU153725 lncRNA downstream 138945 25569989 ~ 25572286 (-) False LOC111193751
TU153730 lncRNA downstream 139760 25568088 ~ 25571471 (-) True LOC111193751
TU153788 lncRNA upstream 115860 26005522 ~ 26007995 (-) True G113818
XR_002650626.1 lncRNA upstream 186377 26076039 ~ 26076705 (-) True LOC111193689
TU153853 lncRNA upstream 373200 26262862 ~ 26263175 (-) True G113865
TU153884 lncRNA upstream 454509 26344171 ~ 26386866 (-) True G113887
TU153897 lncRNA upstream 591952 26481614 ~ 26481831 (-) True G113899
XM_022675087.1 mRNA downstream 25212 25671465 ~ 25686019 (-) True ctsa
XM_007252151.3 mRNA downstream 130305 25578698 ~ 25580926 (-) True LOC103025798
XM_007252144.3 mRNA downstream 197744 25489609 ~ 25513487 (-) True cygb
XM_007252143.3 mRNA downstream 264329 25404994 ~ 25446902 (-) True sphk1
XM_022675598.1 mRNA downstream 382203 25321896 ~ 25329028 (-) True aanat
XM_022675611.1 mRNA upstream 201989 26091651 ~ 26101521 (-) True LOC103030576
XM_022675612.1 mRNA upstream 262785 26152447 ~ 26206570 (-) True eya2
XM_007252675.3 mRNA upstream 402753 26292415 ~ 26302395 (-) True gcnt7
XM_022675617.1 mRNA upstream 834135 26723797 ~ 27069232 (-) True cdh22
XM_022675091.1 mRNA upstream 1403897 27293559 ~ 27317236 (-) True znfx1
trnar-ccg_1 other downstream 709475 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 1809733 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 1917770 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 2158167 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 2399245 23299228 ~ 23311986 (-) False LOC103039435
TU153804 other upstream 143233 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 456478 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 1427746 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 2235574 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 2458603 28348265 ~ 28361481 (-) True G114270

Expression Profile