RNA id: XM_007252144.3


Basic Information

Item Value
RNA id XM_007252144.3
length 2521
RNA type mRNA
GC content 0.47
exon number 3
gene id cygb
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25489609 ~ 25513487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagaaagagagatacagggaaaaaaagaaagaaaaagaaggaagacAGTGTTTGTTTGGTCCATAGACGGGTGTCAGGAGTCGAGGGCATCCTGCCTGCCCAAGGGTGCAGCGAGGGGCAAGGGGTGAGAGGGAGGCTGGACACCCTCTGCTCTCTCTGCTCTATTGCCCTGCGCTCCTGCTGCCCCCTGCGGCTCCTGCGCCGCCCCTCACCACCCCCCCAGCCCCTAATCGGCCCTTCATCACCTGGCTCTGGACCGGGCTCCCCACCTTGTGCCTGCgggatggagaaagagagggacgTGGATGAGCCGGAGCGGAGGGAGCGCGCCGAGCCACTCAGCGACCTGGAGTGCAACATTGTGCAGAACACCTGGGCAAGAGTCTACGAGAGCTGTGAGGATGTGGGCGTGGCCATCCTCATCAGGTTCTTCGTGAACTTTCCCTCGGCAAAGCAGTACTTCAGTCAGTTCCAGGACATGGAGGATCCTGAAGAGATGGAGAGGAGCTCCCAGCTGAGGAAGCACGCCTGCAGAGTCATGAACGCCATCAACTCAGTGGTGGAGAACCTCCATGACCCAGAGAAGGTGACGTCTGTACTGGCGCTGGTTGGGAAGGCTCATGCACTCAAACACAAAGTGGAGCCCATGTACTTCAAGATCTTAAGTGGGGTTATTTTGGAGATCTTGGCAGAGGATTTCGGCGAGTGCTTCACCCCCGAGGTGCAGACGGCCTGGACCAAACTGATGGCGGTGCTCTACTGGCACATCACTGGAGCCTACCAAGAAGTGGGCTGGGTCAAGCTCTCCAGTTCAGCTGTCTGAGACCAGCCTCAACCAtgcacacataaatacacacacacatatcgaaacacacaaaaacacaaaaaacataaacagaCTGGTTTTAACACCCATTTGGACTGAACAAAATGCAGAAGGGCGGGAAGAAAATGCATTGGATAAAAAGGATGGAGGAATCTTCTGGAAACTAATCACATactattttgtttgtatttttactgtttataaccTGATAAGAACCACACTGACCACATATGATAAtcttatttgtgtttgtgtgtaagcaTTTCATATCTTAAATGAATATCAATGACATAAACAGTGTCCTTAGGTTTTTGTCCTGAACCGCACTCTGAAACCTGAGACTTGATCCACACCCAGAGATTCAATACATAAGTTGGATTTGAACCCAGAGACCAACACTCCATTGGCACCCACAGATTTGAGACTCAACTCACACTCAGTTACTTGTAACTCGACTGGCACCCAGAGATTGAGACTCAACTCATACCTAAGGACTCAATACTCAATTTAGACGTTCAGTTGAAGACTGCAGACATTTAAACAGACttaaaactgaactaaaaccTGGACTGAATATCCCACTCAGAGGCTCAGAACTCAACCTCGATAACTCCCCTGCATCTTAGAGGCTCCAGACTCTTAGACTTCAAAGACTTATACCTAACTCAGTCTCAAAACTCAATTACACAAGAGTGGACCTGGCCTCAAACCCCAGACACGTGAGATTTAACACGAGTGGCGAGAAATTGATTGGTCATGACTTAAATTAATCGAACAGACTCAAATTCTCAACAACTAGACCCTGAATTCTGGGTATCACACAAAACCAGAGATTCAAGAACTCCCTTGGAAACTCAAACCGAAGAGACTTGAGACCCAATTCTGATTCAAACCTAAGTGAtttgagactcaactcagactcaaacCCAAGTGACCCCAGATTCTGATTTAAGGCCAAATGATTTGAGACTCAACTCAGGCTCAAGTCTCAACATTCTGATTCAAACCCAAGAGACTTGAAACTCAACTCAGAAGACTTAAAACTCTATTCAAATTTATACCCAGAGACTCTGGACTTTACTTGGACATTCACCCACAAACTCCAGCCTTAGCTGACATCCAGAGACTCCAGCCTTGACTGTCTATTACATCCCCACCAGTTGCCAATTACAGTAAGAAACCAACTGGGCCATAATAAAACCCAAACTACCCTACAGCAAACAAACTCCTCCCGAGACATATACACTCACACTGACACAAACAGTACATGCTctccaaacacaaacacacaatttagtgtatatatCTGGTGGTTGGACCTCAGAGACCTCacttgattggttgattggatTGGATGCCTATGTTCATTTGTGTTCATGAATTTCATCCTGAAATCATCTTATTTTTCCCTTCCTCCCCCTCCTCCACTGTCCACTCCAGATGCCCTGTGCTCAGGGGGCAGGTAATTGAAGTAGAGGAAGATTTCAGATACACATCGGCGCCATGATACATCTCAGTGGTTCCTGTCCTCAACatcaacaccacagaaaccacaaacacacacacagctcaccaCATCAAAGTGAACCTAGCATTAACAGTGCAAGCAAATGGAAGCAAAGCAggcacgcatacacacactctcaaataCACATATAGTCAGTTTCACAAGCCtagcaataaacacacacaca

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K21894 CYGB; cytoglobin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153703 lncRNA downstream 15954 25470472 ~ 25473655 (-) True G113753
TU153579 lncRNA downstream 167752 25318549 ~ 25321857 (-) True G113668
TU153561 lncRNA downstream 204066 25230816 ~ 25285543 (-) True G113652
TU153556 lncRNA downstream 269854 25216815 ~ 25219755 (-) True G113649
TU153527 lncRNA downstream 289491 25199179 ~ 25200118 (-) True G113631
TU153710 lncRNA upstream 16171 25529658 ~ 25529931 (-) True G113756
TU153721 lncRNA upstream 47808 25561295 ~ 25563405 (-) True G113767
TU153730 lncRNA upstream 54601 25568088 ~ 25571471 (-) True LOC111193751
XR_002650694.1 lncRNA upstream 54850 25568337 ~ 25574469 (-) False LOC111193751
TU153725 lncRNA upstream 56502 25569989 ~ 25572286 (-) False LOC111193751
XM_007252143.3 mRNA downstream 42707 25404994 ~ 25446902 (-) True sphk1
XM_022675598.1 mRNA downstream 160581 25321896 ~ 25329028 (-) True aanat
XM_007252138.3 mRNA downstream 280298 25205651 ~ 25209311 (-) True ten1
XM_007252134.3 mRNA downstream 373913 25096237 ~ 25115696 (-) True cep95
XM_007252129.3 mRNA downstream 489716 24985711 ~ 24999893 (-) True c13h17orf58
XM_007252151.3 mRNA upstream 65211 25578698 ~ 25580926 (-) True LOC103025798
XM_022675087.1 mRNA upstream 157978 25671465 ~ 25686019 (-) True ctsa
XM_022675607.1 mRNA upstream 197744 25711231 ~ 26019447 (-) True LOC103035347
XM_022675609.1 mRNA upstream 197744 25711231 ~ 25889662 (-) False LOC103035347
XM_022675608.1 mRNA upstream 197744 25711231 ~ 25889662 (-) False LOC103035347
trnar-ccg_1 other downstream 487853 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 1588111 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 1696148 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 1936545 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 2177623 23299228 ~ 23311986 (-) False LOC103039435
TU153804 other upstream 519408 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 832653 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 1803921 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 2611749 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 2834778 28348265 ~ 28361481 (-) True G114270

Expression Profile