RNA id: TU153579


Basic Information

Item Value
RNA id TU153579
length 3204
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G113668
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25318549 ~ 25321857 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttcttctgtaaagttgctattgTGGAGAgacaagttattttttttttttttggagtaacaTATTTCAGAATCCATAGACATGACCACAATTCccttttaattgatttaaggCACAGAGCACTGCTGTCCGTAAACGTAGAACATTTCCTATTCTGCAACAGAATAATGGCACGTTATGGTTTAAACATGTACAAAAGTAGcataagcacaaaaaaacatcaataataaatgatggtaataattacaataataatcaaCTGCATTAAAAAAGATACATTCTCTTTCACAATCTTTCACACGATGATAATCTATAAACCTGAACAATGTTCCGTGCTTCGTTTATAGACTAATCCTATAGACTAATGTTTCCATGCTGCCTGGAGGGCTGCGTCGGAGACGGACACATCGAACGATGGACTGTAAACCAGCTTTACTGCAGATTTAGGAGCTGGTGACTGAACATGACTAATCAAAGCCTCCTATTCTCAGTTCATCTCAATAAGACTGTAATCCTTTTCACAGTCAGTCATCGCTTTTCTCTCTCCGTAAGCCGGACACATACAGAGGAAGTTTTACTTCTAATCTCCAGCGCAGAGTGCAGGCCCACAGGAGGAGAACAGTGTTTCAGAGTGTTCTATAATATAGTGTGAACAAACCAAAAAGGACAGAGTACAGGCCTTTTCACACAGAGTCTGATTTTTTTCGGACGAGTTTTGGTACACACTGATAGACCGTTCCATTTAAAACACATCCTTGTTTCTACATTCTTTGTTCATTTTGTCATCTATATTTGACGTATAGAAGAATTATGCAGTTCTATTTTTTActtcttagcactgcagtgactgtacttacatggtggtggtgtatgaggtgttagtgtgtgttgtgctggtaacAGTGGAACAGACAGCAgcgctgctggagttttttaacACTATGTTTAATCACTCATTGTCCTCCACTCTGTTACACCCTCCTACCAAAAGCTtttgtgttggtcatcctctatctagtccttcatcagtggtcacagaACGCTGGTGGCTGGATATTTTCAGTTAGTGGATTATTCTCattccagcagtgacactaaggtgtttaaaaactccagcagcactgctgtggctGATAAGTGAAGCTAATAGTGTGAataatgagtgtagaaacaagaatgTGGTATTAATGAAGTGACCAGTCGGTATATTATTGATATTGTTTCACACTGAGCTCAAAACTAACAGAAGCTTATAATCTGATCAACACACTGACCATAAAAATACAGGTTggtaaaaaaactgaaatctcTGGCAGAACAGAGTtgaaaaccacattatgaagccaTTTTCGAAGTATGTCTAGGAGCATCTTTGATGTCAAAAAGAATCATGACCTATAGCTTCCCTCGCTAATGAGCACTTGTGTGGAGGAGGAAAATTTAAGTGAGCAGTAAAAAGTGAGCAGTATGCAGACAATGAGCAGAGAAACCAAAAGAGTGGACATTGATGAGACCTCTGGAGGtcctctctgctttttttttatacaaagtaAAGTTCCGCAATTATACTCTGTGTAAAAGGTTATATACAGTGTTGCAGAAGGGCATTAGATTTGCTTATCAAGGCACGTTTGAAGCAGACTAGGCCACTGTGATAGCTGGTATTACTGAATAAGATAAAGGGACACACAAACAGCTCAAGTTCCaccaattaataaaaaaaaacaaaaacaaaaaataaaaaagtcaaacatgtacacatacagtatatggctCAAGTCTTCCAGTTCATTTAAGGTAATGGATTGTCTTCGTGGCACGGCCAAACACGAGGGCGGACTTGGAGgaacacttaaaatattaaaaaaaagtatgacgTGTTGTGAATGTTACAATGTGAACACAAAGGACggcattataaagcatttaagGAAAATGCCACATATTTATGAAAATGTCTGTATTTCAGAAGTATAATTCGGTTGTTAAGATTTAGAAGAAAGTAATTTAGAGTGAATGGAAGCAAGTGTTGCAAGTGACCGATATCATGTTAGaggtgatgtgggaagagagcgccatctacccaccgcTGAAAAAGCAAGCCCAATCATGCTCTCTCAGGATGATAGTGGTACAGAGACTTTAAACCACAGAACCATTTTAGTTAGATCAAAGTCCTATTAAAGATTTAATGGGGAGGGTGAAGCTAGCATATGATTCCTTCAAGTCACACAAAGCAAGCTACCCTTCACTGGACAGCTCAACATGCTttgaggagaacactaactgcctGTTCTGCACTAACGTCCACTTACACATGCCCACATTGGTTAGTACTGCACTGTGTAATTGGGAGGGGTAGTTCTTTAGAAACTACCAAACCACTGATGATTTTCCTACATGTTTGCCATGATTAAAGGTTTAGTGAAAGGCAGCAAAGTTATCTGTTAGTAAAAATTAGGTTAATTTAAAGCAAGTGTTTGAACGGATTTAGAGATTAGTGTTtgacattaattatttttcatgtATTGTACCTGCAGAGAAAGGCATTTTGCAAATCTCACTCTTTGGCACTTGGAGTGCCAACAAAAATGACACGATAATGCCTTAAAAGAACCAACTCATAGGTCAACAGACCTACTAGAACCCACAAGATATAGTTCCTCTTCCCTGATGTTTTTCTTCAGGATGCTCACTTCCAAAAGCCAGTTCTCCTGATGTCCTTTCTCAGGACTCTGGTATCTACATGGCACCTGGAAGCTTCTCATTAGCACAGCTGCTACTACGCTAGTGCACCACATGGTCAATGTCGTATCGCTCACAGAACTTGCTGGTAAATGGGAGACAGGTGAGATGCTCCAGCCAGTACCAGTTGATGGGGTAGATGTAGAACCAGACGATGAGCGAGGAGAATAAGCCCACATAGACAATCAATGAGAGGATGATGAGCACCCGCTTGCGGTACTTGTCGAAGGTGCCGAAGGTAACATAAGGCAGGAAGGCGAAGGAGAGCAGCAGGCCGCTGAGGAAGCCGAAGATGTGGGCGATGTTGTCTATCCACGGCAGCAGGCcacagaagaagaggaagaggacgaTGCCGAGCAGCTTGAGGAAGGCTTTCCACGGTTTCTCCAACACCTGCCAGCCCTGGAACAGCTCCACGAACAAACACGCTAGCAGGCCGAACTGGGAGCCCGCTGGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153561 lncRNA downstream 33006 25230816 ~ 25285543 (-) True G113652
TU153556 lncRNA downstream 98794 25216815 ~ 25219755 (-) True G113649
TU153527 lncRNA downstream 118431 25199179 ~ 25200118 (-) True G113631
TU153415 lncRNA downstream 332915 24983688 ~ 24985634 (-) True G113547
TU153412 lncRNA downstream 336804 24981423 ~ 24981745 (-) True G113544
TU153694 lncRNA upstream 96767 25418624 ~ 25510087 (-) True G113744
TU153703 lncRNA upstream 148615 25470472 ~ 25473655 (-) True G113753
TU153710 lncRNA upstream 207801 25529658 ~ 25529931 (-) True G113756
TU153721 lncRNA upstream 239438 25561295 ~ 25563405 (-) True G113767
TU153730 lncRNA upstream 246231 25568088 ~ 25571471 (-) True LOC111193751
XM_007252138.3 mRNA downstream 109238 25205651 ~ 25209311 (-) True ten1
XM_007252134.3 mRNA downstream 202853 25096237 ~ 25115696 (-) True cep95
XM_007252129.3 mRNA downstream 318656 24985711 ~ 24999893 (-) True c13h17orf58
XM_022675589.1 mRNA downstream 424331 24882893 ~ 24894218 (-) True nol11
XM_022675581.1 mRNA downstream 859379 24422157 ~ 24459170 (-) True LOC103034389
XM_022675598.1 mRNA upstream 39 25321896 ~ 25329028 (-) True aanat
XM_007252143.3 mRNA upstream 83137 25404994 ~ 25446902 (-) True sphk1
XM_007252144.3 mRNA upstream 167752 25489609 ~ 25513487 (-) True cygb
XM_007252151.3 mRNA upstream 256841 25578698 ~ 25580926 (-) True LOC103025798
XM_022675087.1 mRNA upstream 349608 25671465 ~ 25686019 (-) True ctsa
trnar-ccg_1 other downstream 316793 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153097 other downstream 1417051 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 1525088 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 1765485 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 2006563 23299228 ~ 23311986 (-) False LOC103039435
TU153804 other upstream 711038 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 1024283 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 1995551 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 2803379 28125236 ~ 28129856 (-) True G114134
TU154457 other upstream 3026408 28348265 ~ 28361481 (-) True G114270

Expression Profile