RNA id: TU153415


Basic Information

Item Value
RNA id TU153415
length 1947
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G113547
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 24983688 ~ 24985634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAaatcaaaaagcaaaaacaaacaaaaagctaaAATCTTTAACGCTTTGTGGTTATTTTTcctactgtctctctttctgagcTGGGGTGGAATTACTGTGTGTGACTGAGGAAAGGGAAGGCGGGTGTGTATCGGagcatatgtgtgtatgtgtgtttgtgttctaaTCGGACAGTAATCTGATCCTGCGCACACCTGGTTACATGAAAGAGGGCGGTTCTGTTTAGGGTCCGGCGAGCAAAAACACCGGCCAGGACCTCAGGTTATGGTAACATAACGCCAACTATGGCGAATGTttgccctcacacacacaaagatacacacatatatagaggTTTTGGCCCGAGCTCAAAGGCAGTGTGTGAAGGGGGCTGGAGTGGAAGGGGAGATGGGAGAGGTGCAGGCTGAAAAGAAGAGGAGCTTTATGGAAGTGCTGggtgagggagaaaaagagaaggaataTGTGTAACCCCCTTTTTTGGACTTAGAAGGAAAGATTTAGGAAAGGAACTGGCTCATTTGGGCTTCTCTCTCCCTAAAGGGATAGGGGAAAAATTTAATTCACACAGTGGTCGTCAGTCATGCCTGGTGTCTGAACTTTTTGAGCTTTTTCACTTCTTACGCACTGGAGCTATGAACTTAATGTAGCTAGCACACAgtagaatattaaaaatgacaattttgCATAGTGATAACAGTTTGCCCAAATCATTACGCAATCTCTTAAAGCTGTGTGAAGGTGTTCAGTAgtctttcttatttttatatataatttatttctatttttttgttccattttgTTTCATCTCTCCATTTTTATTCCATACTACATAATATGACCATAAAACTGGACCAATAGGATTAttgaaaatgacctgaaataaactagttttacatctacttccattgaaagtttgatctctctcctgtaaagttgctgatttggatatacatgtttttcattggacagcgacagtGTATTCCTTTTAGAAGGTCAAATGCTTAATTAAATGCTCATTAGTGATCCCCCCAACACATCACTAGGAGGGTAAATACAAGCTCATGACTACTCgaatacatttaaaaccagtTAATACCTATTTTTGATGCAGCATCAGCTGCAaatgcacttggaggaaagaaCAGCTCCCCAGCCCTcttacatcagccaacagatgcctgtgctgaccaacattaaAATttgagtgatgtgggaagagacccccaactacccacccagaaagccTGAGACGCTTTTGAGCCTTGTTATAGCAGCATCATGTAAAGCATCCACCTCGCCAAGACGTGTTTCACAACCAAAACGTTTCcagctattgttttttttttttttggtctaacTAACTGGCGACGCATTTGTCTACCaagtgtaccgtatttttcacactttaaggCACACCCGATTATAAGGGGCACTGTGTAGCATCCAGATGTTTTATGGGCCCCAACAGTGGCAGGTTAGCATACCTATTTATCAAGCCCAAAACCCTGTCATTATTATTAACCTAGTTCTCTATCAGCTACCCATGTTGTTGCCTATATTTCGTACATAAATGTCacacattaaacattttaatctgCTAAGGACAAAAAGCTTTATGTTTGCTTAAAAGCTACAGTGTAAAATACATTAACTGCTATGAAACTAAGACATTAGAGCAAGCAgtgagctagttagctaacgttgTTTTGATTGTGCTAGTAGCCCAGggcatgatactatttttaaataacattctGGGCATGATATAATTGGGTTAAAAACTAGCTAAACAGGCAGATTTGTTTTTCCACTAAATAAGAAGGGCTTTGATTGGGagcaaaatcattttaaaagttaaaatgacAAATAGACACAATACCAAATAACATATTCAGGCCTAGACTGGAGGAAGTTGGGGGTGAGGTCAGTTATGAAGAAGTTTTGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153412 lncRNA downstream 1943 24981423 ~ 24981745 (-) True G113544
TU153408 lncRNA downstream 9140 24969227 ~ 24974548 (-) True G113542
TU153401 lncRNA downstream 42798 24936756 ~ 24940890 (-) True G113535
TU153391 lncRNA downstream 125133 24858264 ~ 24858555 (-) True G113525
TU153330 lncRNA downstream 564065 24413229 ~ 24419623 (-) True G113471
TU153527 lncRNA upstream 213545 25199179 ~ 25200118 (-) True G113631
TU153556 lncRNA upstream 231181 25216815 ~ 25219755 (-) True G113649
TU153561 lncRNA upstream 245182 25230816 ~ 25285543 (-) True G113652
TU153579 lncRNA upstream 332915 25318549 ~ 25321857 (-) True G113668
TU153694 lncRNA upstream 432990 25418624 ~ 25510087 (-) True G113744
XM_022675589.1 mRNA downstream 89470 24882893 ~ 24894218 (-) True nol11
XM_022675581.1 mRNA downstream 524518 24422157 ~ 24459170 (-) True LOC103034389
XM_022675575.1 mRNA downstream 944861 24027185 ~ 24038827 (-) True csrp1
XM_007237592.3 mRNA downstream 967829 24004549 ~ 24015859 (-) True tnni1
XM_022675573.1 mRNA downstream 992865 23953395 ~ 23990823 (-) False tnnt2
XM_007252129.3 mRNA upstream 77 24985711 ~ 24999893 (-) True c13h17orf58
XM_007252134.3 mRNA upstream 110603 25096237 ~ 25115696 (-) True cep95
XM_007252138.3 mRNA upstream 220017 25205651 ~ 25209311 (-) True ten1
XM_022675598.1 mRNA upstream 336262 25321896 ~ 25329028 (-) True aanat
XM_007252143.3 mRNA upstream 419360 25404994 ~ 25446902 (-) True sphk1
TU153097 other downstream 1082190 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 1190227 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 1430624 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 1671702 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 2378564 22594444 ~ 22605124 (-) False LOC111193684
trnar-ccg_1 other upstream 16050 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 1047261 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 1360506 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 2331774 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 3139602 28125236 ~ 28129856 (-) True G114134

Expression Profile