RNA id: XM_022675575.1


Basic Information

Item Value
RNA id XM_022675575.1
length 1158
RNA type mRNA
GC content 0.43
exon number 6
gene id csrp1
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 24027185 ~ 24038827 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttcgctctctcacacacatcctCTTTTGCATAATAGTAGCAGGAACTCCTCTGAACTGGTCTAAACCGTTCCTGAGCTGCGTTCATCCACACTTCATCCACACCGACTGCAGgaTGCCACTCGGAGGGGGAAACAGGTGCGGCTGCTGCCAGAAGACTGTGTACTTTGCAGAGGAAGTCCAGTGCGAAGGGAAGTTTTTCCACAAGTCCTGCTTTCTCTGCATGGTGTGCAAGAAGAACTTGGACAGCACCACAGTGGCCGTACACGTGGACGAGATCTACTGCAAGTCCTGCTATGGCAAGAAATATGGGCCAAAAGGCTACGGTTTTGGAGGTGGGGCAGGGACCTTGAGCATGGACACGGGTGAAGCCCTGGGAATTAAACCTGAGGAGCAAGGACCACACCGTCCCACCAACAACCCCAACGCTTCAAAGTTCGCTCAGAAGTTTGGAGGATCGGACGTATGCCCTCGCTGTGGGAAATCAGTTTACGCAGCAGAAAAGGTGGTGGGAGCCGGAAATtCGTGGCATAAGAGCTGCTTCAGGTGCGCCAAGTGTGGCAAGAGCTTGGAGTCCACCACTGTAGCTGATAAAGATGGGGAAGTCTACTGCAAAGGATGCTACGCTAAGAATTTTGGACCTAAAGGTTTCGGGTTTGGTCAGGGAGCAGGAGCTCTAGCTCACGCTCAGTAAAGCAGCAGAGACCTGAAGATCCTCCAGCTTCTACAGCAGAGTCTTAAACCCATGCAGTTTACACACTTTAGAAATGCttctaaatgtaaatgaaactATATTTTATAGTCATTGTTTGAGATGGAACAAATCCCAGAAGTGACTTGGCAACATGCTAACGGCTACTGGCTAATTATATCTACTGGGGTTGGtttaatatttctattttttaaataataaaataatttttgcaaCAGAAAGAGCTAATTTATTacagtaacaaaaaataaaacactgttttattcttgttttacATTGTTCCAGCAACAGAAAGTTCTATTCTTATTCTAATTGAGTTTTTTACTAACTATATTTCTAAATGAACACTACATACAGTATTACTACAGTATTACAACAATATTACATATAACATGTGGTCATGGGGGttcataaaaaaatctgaataaagaaATTATAATACGCTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153178 lncRNA downstream 10384 24013049 ~ 24016801 (-) False tnni1
TU153112 lncRNA downstream 80464 23946107 ~ 23946721 (-) True G113318
TU153085 lncRNA downstream 123481 23850328 ~ 23903704 (-) True G113295
TU153071 lncRNA downstream 266053 23759936 ~ 23761132 (-) True G113284
TU153181 lncRNA upstream 8349 24047176 ~ 24047420 (-) True G113367
TU153208 lncRNA upstream 215192 24254019 ~ 24254268 (-) True G113393
TU153220 lncRNA upstream 246126 24284953 ~ 24288949 (-) True G113399
TU153332 lncRNA upstream 373370 24412197 ~ 24415306 (-) False G113471
TU153330 lncRNA upstream 374402 24413229 ~ 24419623 (-) True G113471
XM_007237592.3 mRNA downstream 11326 24004549 ~ 24015859 (-) True tnni1
XM_022675574.1 mRNA downstream 36352 23953395 ~ 23990833 (-) False tnnt2
XM_022675571.1 mRNA downstream 36359 23953395 ~ 23990826 (-) True tnnt2
XM_022675573.1 mRNA downstream 36362 23953395 ~ 23990823 (-) False tnnt2
XM_007237294.3 mRNA downstream 429439 23589988 ~ 23597746 (-) True LOC103047745
XM_022675581.1 mRNA upstream 383330 24422157 ~ 24459170 (-) True LOC103034389
XM_022675589.1 mRNA upstream 844066 24882893 ~ 24894218 (-) True nol11
XM_007252129.3 mRNA upstream 946884 24985711 ~ 24999893 (-) True c13h17orf58
XM_007252134.3 mRNA upstream 1057410 25096237 ~ 25115696 (-) True cep95
XM_007252138.3 mRNA upstream 1166824 25205651 ~ 25209311 (-) True ten1
TU153097 other downstream 125687 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 233724 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 474121 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 715199 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 1422061 22594444 ~ 22605124 (-) False LOC111193684
trnar-ccg_1 other upstream 962857 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 1994068 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 2307313 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 3278581 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 4086409 28125236 ~ 28129856 (-) True G114134

Expression Profile