RNA id: XM_007237294.3


Basic Information

Item Value
RNA id XM_007237294.3
length 1211
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC103047745
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 23589988 ~ 23597746 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtaactgtttgTATCTGGAAATGAGCGAGCGATTTTGTGGTGCAACAAGCTTCCTGTATCACCACCACAACCTCAGAGCAGCAGATATTCCAGCAGCTGATGTAGTTCTGTGTCTGAGCTGCGATGGCTGATGGTGGAGAGGTGGTGTACACGGCTCTGGAGGTGATCATTGCTGTAGGCTGCTGTCTAGGGAATGTGCTGGTCATTTGGGCGGTGTGGACGTGTGGAGCCCTGAGGCAGCCCACCTACTGCTTCATCGTGTCCCTGGCCGTGGCCGATTGCCTGGTGGGGGCGGTGGCCGTGCCCCTGGCCGTGCTGGTGGACGGACGGGTGGAGATGCCTTTCCACGGCTGCCTCTTCATCAGCTGCGTGGTGATCGTCCTGACCCAGGCTTCAGTCAACTCCTTACTGGCCATCGCTGTGGACCGATCTTTGCGGGTTTACATCCCTCTCAAGTACAAAGGGAGAGTTAAGCTGCTACACTCCTGGATTATAGTAGCTGTATGTTGGGGAACTGCGACTGCGCTGGGTTTTACTCCGATGTTTGGATGGAACAACCGTGAATCCTCTAACTCAACAATAGTGTGCAGGTTCCTGACGGTCATACCCATGTCCTACATGGTCAAATTCAACTTCCTCAGCTGCCTCCTTCCTCCTATGGTCATCATGTCAGCCCTGTACGTCTATATTTTCTGCACGATATCGAGGCATCTCAGAGGAACCATGGTCAGGACCGTCAAGCCCAGTGCATATTACGTTAAAGAGCGGAAGCTGGCCAGTTCTCTGGCTTTAGTTTTGGCTCTGTTTGCTCTGTGCTGGCTGCCTCTACACATCATGAACACTATAGAGTTTTATAGCCAGGGTGGACGTGTTCCTCATTTAGCTTTTTACGTTGGCATTTTACTGTCTCATGCAAACTCAGCAGTGAATCCTGTAGTGTACGCCTTCAGGATACCGAAGATAAAGCAGGTGTACAAAACGACCCTGAAGAAGGCTTTCCCATGCCAAAGAGATCTGCAAAATGATCAGAGTAGGCAGGTGACAGACAATAACCCCAGTAGCAGCACAAACACCACAGCAAAATCGTTCTCTAATCCTGCGGAACAGAGAGTCACAGCGTAGAACAAGCTCAAAAAGTTATATACAAATAtccccattcattactctgtaggtagaagtatactGCAGATacaagggtttaaaatact

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04664 Fc epsilon RI signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152968 lncRNA downstream 19013 23570726 ~ 23570975 (-) True G113194
TU152967 lncRNA downstream 26181 23563587 ~ 23563807 (-) False LOC103040267
TU152961 lncRNA downstream 50639 23538271 ~ 23539349 (-) True G113188
TU152953 lncRNA downstream 85959 23503808 ~ 23504029 (-) True G113181
TU152946 lncRNA downstream 96301 23458700 ~ 23493687 (-) True G113174
TU152977 lncRNA upstream 25318 23623064 ~ 23623381 (-) True G113203
TU152982 lncRNA upstream 42395 23640141 ~ 23640359 (-) True G113208
TU153039 lncRNA upstream 66900 23664646 ~ 23762140 (-) True G113260
TU153047 lncRNA upstream 88527 23686273 ~ 23686831 (-) True G113267
TU153053 lncRNA upstream 96623 23694369 ~ 23694962 (-) True G113270
XM_007234295.2 mRNA downstream 26202 23559101 ~ 23563786 (-) True LOC103040267
XM_007234283.3 mRNA downstream 45694 23540708 ~ 23544294 (-) True sys1
XM_022675564.1 mRNA downstream 54704 23529197 ~ 23535284 (-) True snrpc
XM_022675563.1 mRNA downstream 111497 23460518 ~ 23478491 (-) True c13h6orf106
XM_007234284.3 mRNA downstream 164272 23404266 ~ 23425716 (-) True spdef
XM_022675574.1 mRNA upstream 355649 23953395 ~ 23990833 (-) False tnnt2
XM_022675571.1 mRNA upstream 355649 23953395 ~ 23990826 (-) True tnnt2
XM_022675573.1 mRNA upstream 355649 23953395 ~ 23990823 (-) False tnnt2
XM_007237592.3 mRNA upstream 406803 24004549 ~ 24015859 (-) True tnni1
XM_022675575.1 mRNA upstream 429439 24027185 ~ 24038827 (-) True csrp1
TU152964 other downstream 36924 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 278002 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 984864 22594444 ~ 22605124 (-) False LOC111193684
TU152733 other downstream 1112681 22473702 ~ 22477307 (-) True LOC111193749
XR_002650693.1 other downstream 1159604 22376312 ~ 22430384 (-) False LOC103026049
TU153063 other upstream 138208 23735954 ~ 23793461 (-) True G113276
TU153097 other upstream 303377 23901123 ~ 23901498 (-) True G113304
trnar-ccg_1 other upstream 1403938 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 2435149 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 2748394 26346140 ~ 26393197 (-) True G113888

Expression Profile