RNA id: XM_022675563.1


Basic Information

Item Value
RNA id XM_022675563.1
length 2502
RNA type mRNA
GC content 0.46
exon number 5
gene id c13h6orf106
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 23460518 ~ 23478491 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCGTTCTTTTACCCCCTCAGAATAGCAACAGCTGACGTGCCCCTCCGCCCCCCATCTacccttccctccctccctcctcctcccacTCCGCCGGGTGACGTCACGCGTGGCCCTCGGCCATGCGTACTGAGCTTGTTGTTGACTCGGTTGTTATGAGTGGAGAAGAAGGCCTCGGATTCAATTAAGAACTTCTCCCGCCGCTGCCCCGGGGACCCCCTGCCGATGGAGGGCATGGACATAGACCTGGACCAGGAGCTCATGCAGAAGTTCAGCTGCATGGGCACCACGGACAAAGATGTCCTCATCTCCGAGTTCCAAAGACTGCTGGGCTTCCAGCTCAACCCCGCTGGCTGCGCCTTCTTCCTAGACATGACCAACTGGAATTTACAAGCAGCAATTGGAGCTTATTATGACTTTGAGAGTCCGAACATCAACACGCCATCGATGTCTTTTGTAGAAGATGTGACTATAGGGGAGGGAGAGTCTGTGCCTCCCGAAACACAGTTCACAAAGACATGGCGGATACAAAACACAGgtgcaGAGTCGTGGCCCCCAGGCGTGTGTCTGAAGTACATAGGAGGGGATCAGTTTGGTCATGTGAATATGGTGATGGTGCGATCTTTGGAGCCACAGGAGATCTCAGATGTCAGTGTACAGATGCGCAGTCCAGCTAATCCAGGCATGTACCAGGGCCAGTGGAGAATGTGCACAGCCACCGGGCTCTTCTACGGAGACGTGATCTGGGTGATCCTCAGTGTGGAGGTCGGGGGTCTTCTTGGAGTCACGCAGCAGCTGTCCTCCTTCGAGACGGAGTTCAACACTCAGCCACACCGTAATGTAGAGGGAGACTTCAACCCCTTCGCTTCACCACAGAAGAACAAGCAAGACCCCAACGAGGATAACCTAAAGGACCCTGGAGGCCCTTGGGTGGCCCCTCTGGACTCCATTCAGCAAGATCAAAATGGACTCTCTCACAATTCTGTAAATATTACACCAAATGGTCTCCAAAACAACTTATCGGTAGTGACTTACAGCCAGGGCTGCCACGGGCCCTACCCTTTTGGACAGTCTTAAGGGACAGAAATCATCACCATCTGGAATCCCCCCCTTTTCTGTGGGGAGTAACAGATTTATTATAAAGACTTGGCAACCCTCCTCTCCCCATGCATCACAACACGACCTAAGATAGACAAGGCTGCTTGGTTCTAAATCAGCGTCTGGCCGTTGTCAACACCTGAGTTACGCATGTGTGAATGCTAAGTTAAGATGAGTGCTAGAAATCCTCAAAGTCAAATACAcaggtttattttttgttttttttgggggggtctGTTTTGTCTCAAACCGTAGGTTTAAAGTGAGAGATttgacttgtgtgtgtgtgtgagtgcgtatGTACATTacgtatgtatgtgtatatgtacatatgcgtgtgtgtttgtgtgtgtgagtaagatGCACAAAAGAGAAGTGAAAAAAAGCCATTGAAAAGAGTTTTTGCTTGTTaagtagttttatattttacattgatgTTCTTGATGACTTTTACTTTGCAAAACTGAATGATTTTACTGAAAATCCAGCGATtgtctacattaaaaaaaacataaaaaaaagcaggAGTCATCCTGTACTGCTCAATAGAACTGTGGAATtggttaaattatattaaaatttccTTCTTACACTTCTTTAAATGATTCTCAAGGCTTTTGCCTTGGTTTATTTAGTCCTAATTTATTATCGCTGATCTTAATCTTAACTCCACAGACCTTTACAAACCGATCTCACGTCAGGATCAGTCCACAAACCCAACAGTAGTGCTTGTTGGAGGCCAGAAGATGGAACCGTTGAACCTATGAACAGAACACACCCTTTTACAGCTCTGTTATACTGGAAAACCTACATGCTTAGCAGCCCCTTCGGTCATTGAGGACTTGTATCACAATTGCACTGAGCTACACTGAGCTCCCACTTGAAAGCCCTGATGATCTCGTTGTTGCAGTTGCTTGTGCGGACagttcgttttttttctcccccgTCTGAAGCTTTAAAGGCTGACAGCTTTtgagtgcaagtgtgtgtgtgtgtgtgtgagagagtgtatgtaagcgagtgtgtgtgtgtgttgtggctTAAATCCTAGGAGCTCACGCCTGGGGCACAGACGTTTGACTCAAGCGTTCATTTCATTACGGCTTGCTGGTTTCTCTAATGCGAGAGTCCCCAAAGCACATGATTGTTTGACACTATTAGTCAGCTTCGCCACGTTTGTTTATTCGTTTATTTGTCTAttcatttctttgtttgttattcAATTCACCACTATTAATCAAAAATGATCTGCACTGTTTCGAATCTCAAGAGTTGAGGTTTTATGGAGGATGTCTTTTGAACTGTCTTTATTCTCTTGGTTTTTGAATGTGCTCTTTCCTAAAATCCCCAAATTACCAATTACACTTGCTGgaaaaactcaaaaataaaacctatatgAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152917 lncRNA downstream 216588 23243521 ~ 23243930 (-) True G113146
TU152913 lncRNA downstream 241079 23219209 ~ 23219439 (-) True G113142
TU152840 lncRNA downstream 256044 23204259 ~ 23204474 (-) True G113088
TU152833 lncRNA downstream 397659 23062440 ~ 23062859 (-) True G113082
TU152830 lncRNA downstream 409085 23051009 ~ 23051433 (-) True G113080
TU152953 lncRNA upstream 25317 23503808 ~ 23504029 (-) True G113181
TU152961 lncRNA upstream 59780 23538271 ~ 23539349 (-) True G113188
TU152967 lncRNA upstream 85096 23563587 ~ 23563807 (-) False LOC103040267
TU152968 lncRNA upstream 92235 23570726 ~ 23570975 (-) True G113194
TU152977 lncRNA upstream 144573 23623064 ~ 23623381 (-) True G113203
XM_007234284.3 mRNA downstream 34802 23404266 ~ 23425716 (-) True spdef
XM_015601583.2 mRNA downstream 49297 23404266 ~ 23411221 (-) False spdef
XM_007234289.3 mRNA downstream 112528 23341712 ~ 23347990 (-) True rps10
XM_007234293.3 mRNA downstream 148505 23299234 ~ 23312013 (-) True LOC103039435
XM_007234292.3 mRNA downstream 171635 23281813 ~ 23288883 (-) True LOC103039131
XM_022675564.1 mRNA upstream 50706 23529197 ~ 23535284 (-) True snrpc
XM_007234283.3 mRNA upstream 62217 23540708 ~ 23544294 (-) True sys1
XM_007234295.2 mRNA upstream 80610 23559101 ~ 23563786 (-) True LOC103040267
XM_007237294.3 mRNA upstream 111497 23589988 ~ 23597746 (-) True LOC103047745
XM_022675574.1 mRNA upstream 474904 23953395 ~ 23990833 (-) False tnnt2
TU152923 other downstream 148532 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 855394 22594444 ~ 22605124 (-) False LOC111193684
TU152733 other downstream 983211 22473702 ~ 22477307 (-) True LOC111193749
XR_002650693.1 other downstream 1030134 22376312 ~ 22430384 (-) False LOC103026049
TU152441 other downstream 1807784 21601244 ~ 21652734 (-) True G112778
TU152964 other upstream 73858 23552349 ~ 23553064 (-) True G113190
TU153063 other upstream 257463 23735954 ~ 23793461 (-) True G113276
TU153097 other upstream 422632 23901123 ~ 23901498 (-) True G113304
trnar-ccg_1 other upstream 1523193 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 2554404 26032895 ~ 26062284 (-) True G113826

Expression Profile