RNA id: XM_007234295.2


Basic Information

Item Value
RNA id XM_007234295.2
length 1459
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC103040267
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 23559101 ~ 23563807 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaagaagaagcagctgCTTGACAAACTTCTTTACTTCTCGTTTTCCATGCATGGCATCCAGACAGCCAGTGTTGAAGGCAGCTGGAACTGGTCACTGAACTAGTTGCATACATTAAAGGCTGGAGAACAAACAAGATCacaagaaagagaggagaaaagaagaagagaggaagaaTAAAAGCGAGGGAGCATGGGAATGTTCATCTGGATTTgtataaaaaggaaaatagaAGGCTAGAGTGCCTCTGAGATACCAAGATCTGGAGCAAAGATGACGGAGTCGCCGTCCTCTCCAGGGATGGAGCGCTGGGAGCATGCGGACATGCTGTACATCTCCATTGAGAGCACCATCGCCCTGGCCTCGGTGATGGGGAACGTGCTTGTGATTCTGGTGGTGGCTTTAAACAGGGCACTCAGGGACACTACCTTCTGTTTCATTGTGTCTCTGGCACTGGCCGACATCACCGTGGGCGTCCTGGTGATCCCGTTGGCCGTGGTCATCAGCTTGGGGCTGAAGACGCAGTTCTACACGTGCCTCTTCCTCTCCTGTCTGCTGGTCATGATCACCCAGACTTCCATACTGTCCCTGTTGGCCATCGCCATTGACCGATTCCTGCGCATTAAGATTCCCACCAGGTACAGCATCATTGTGACGCAGCGTCGTGCATGGGTAGCAGTAGGCCTGTGCTGGCTGCTCTCTGCCATCACCGGATTGGTTCCGATGTTCGGCTGGCACCAGGACGTGAACATCAACAGCACATCACCTATCGAGTGCCAGTTCACCTCAGTCATACGCATGGACTACATGGTGTACTTTAACTTCTTTGGCTTGGTGGTGGCCCCCCTCACCATCATGACCGGGCTGTACATCGAGATTTTCCGCGTCATCCGGCGGCAGCTTAACCGCCGCGCCGAGGCTACCAGCGACTCCAGCAAATACTACCATAAAGAGCTGAAGCTGGCCAAGTCCCTAGCCCTCGTACTGTTTCTGTTCGCCCTCTGCTGGCTGCCACTGCACATAATGAACTGCATCACGTACTTTTGTCCCACGTGTCCGATGCCGAAGAGTGCTATATACGTGGGAATCTTCATGTCACACGTAAACTCCGCCCTCAATCCTCTGGTTTACGCCTTCCGGATCCAGCGTTTCAGGGCCACTCTGGTTCAGATTGCCCATCGCTGTGTGCTCTGCAGAGCTCATGACCCCAGCCCATGTTCATCTGGACCTCCAGCTATCACTGAGAAAACTCAACATGACCTGTAGCAACATCAACTGACGCGGACTACCTGCTACATTTGGACAAATCCTGAAGTTTACAGAGCTGGACTTTACATTTAGTGCCaaagactaataaaaaaaacataaagaactatgactaaaaaaaagttgagttgTTCAATTTAAAGGTAGGGTATCACTTATATGTACAGTGCTGAATAAATGCAATCTCCTGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152961 lncRNA downstream 19752 23538271 ~ 23539349 (-) True G113188
TU152953 lncRNA downstream 55072 23503808 ~ 23504029 (-) True G113181
TU152946 lncRNA downstream 65414 23458700 ~ 23493687 (-) True G113174
TU152917 lncRNA downstream 315171 23243521 ~ 23243930 (-) True G113146
TU152913 lncRNA downstream 339662 23219209 ~ 23219439 (-) True G113142
TU152968 lncRNA upstream 6940 23570726 ~ 23570975 (-) True G113194
TU152977 lncRNA upstream 59278 23623064 ~ 23623381 (-) True G113203
TU152982 lncRNA upstream 76355 23640141 ~ 23640359 (-) True G113208
TU153039 lncRNA upstream 100860 23664646 ~ 23762140 (-) True G113260
TU153047 lncRNA upstream 122487 23686273 ~ 23686831 (-) True G113267
XM_007234283.3 mRNA downstream 14807 23540708 ~ 23544294 (-) True sys1
XM_022675564.1 mRNA downstream 23817 23529197 ~ 23535284 (-) True snrpc
XM_022675563.1 mRNA downstream 80610 23460518 ~ 23478491 (-) True c13h6orf106
XM_007234284.3 mRNA downstream 133385 23404266 ~ 23425716 (-) True spdef
XM_015601583.2 mRNA downstream 147880 23404266 ~ 23411221 (-) False spdef
XM_007237294.3 mRNA upstream 26202 23589988 ~ 23597746 (-) True LOC103047745
XM_022675574.1 mRNA upstream 389609 23953395 ~ 23990833 (-) False tnnt2
XM_022675571.1 mRNA upstream 389609 23953395 ~ 23990826 (-) True tnnt2
XM_022675573.1 mRNA upstream 389609 23953395 ~ 23990823 (-) False tnnt2
XM_007237592.3 mRNA upstream 440763 24004549 ~ 24015859 (-) True tnni1
TU152964 other downstream 6037 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 247115 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 953977 22594444 ~ 22605124 (-) False LOC111193684
TU152733 other downstream 1081794 22473702 ~ 22477307 (-) True LOC111193749
XR_002650693.1 other downstream 1128717 22376312 ~ 22430384 (-) False LOC103026049
TU153063 other upstream 172168 23735954 ~ 23793461 (-) True G113276
TU153097 other upstream 337337 23901123 ~ 23901498 (-) True G113304
trnar-ccg_1 other upstream 1437898 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 2469109 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 2782354 26346140 ~ 26393197 (-) True G113888

Expression Profile