Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022675564.1 |
| length | 1168 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | snrpc |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035909.1 |
| NCBI id | CM008312.1 |
| chromosome length | 44161018 |
| location | 23529197 ~ 23535284 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0000387 | spliceosomal snRNP assembly | biological_process |
| GO:0000395 | mRNA 5'-splice site recognition | biological_process |
| GO:0005685 | U1 snRNP | cellular_component |
| GO:0000243 | commitment complex | cellular_component |
| GO:0071004 | U2-type prespliceosome | cellular_component |
| GO:0003729 | mRNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0030619 | U1 snRNA binding | molecular_function |
| id | description |
|---|---|
| K11095 | SNRPC; U1 small nuclear ribonucleoprotein C |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU152953 | lncRNA | downstream | 25168 | 23503808 ~ 23504029 (-) | True | G113181 |
| TU152946 | lncRNA | downstream | 35510 | 23458700 ~ 23493687 (-) | True | G113174 |
| TU152917 | lncRNA | downstream | 285267 | 23243521 ~ 23243930 (-) | True | G113146 |
| TU152913 | lncRNA | downstream | 309758 | 23219209 ~ 23219439 (-) | True | G113142 |
| TU152840 | lncRNA | downstream | 324723 | 23204259 ~ 23204474 (-) | True | G113088 |
| TU152961 | lncRNA | upstream | 2987 | 23538271 ~ 23539349 (-) | True | G113188 |
| TU152967 | lncRNA | upstream | 28303 | 23563587 ~ 23563807 (-) | False | LOC103040267 |
| TU152968 | lncRNA | upstream | 35442 | 23570726 ~ 23570975 (-) | True | G113194 |
| TU152977 | lncRNA | upstream | 87780 | 23623064 ~ 23623381 (-) | True | G113203 |
| TU152982 | lncRNA | upstream | 104857 | 23640141 ~ 23640359 (-) | True | G113208 |
| XM_022675563.1 | mRNA | downstream | 50706 | 23460518 ~ 23478491 (-) | True | c13h6orf106 |
| XM_007234284.3 | mRNA | downstream | 103481 | 23404266 ~ 23425716 (-) | True | spdef |
| XM_015601583.2 | mRNA | downstream | 117976 | 23404266 ~ 23411221 (-) | False | spdef |
| XM_007234289.3 | mRNA | downstream | 181207 | 23341712 ~ 23347990 (-) | True | rps10 |
| XM_007234293.3 | mRNA | downstream | 217184 | 23299234 ~ 23312013 (-) | True | LOC103039435 |
| XM_007234283.3 | mRNA | upstream | 5424 | 23540708 ~ 23544294 (-) | True | sys1 |
| XM_007234295.2 | mRNA | upstream | 23817 | 23559101 ~ 23563786 (-) | True | LOC103040267 |
| XM_007237294.3 | mRNA | upstream | 54704 | 23589988 ~ 23597746 (-) | True | LOC103047745 |
| XM_022675574.1 | mRNA | upstream | 418111 | 23953395 ~ 23990833 (-) | False | tnnt2 |
| XM_022675571.1 | mRNA | upstream | 418111 | 23953395 ~ 23990826 (-) | True | tnnt2 |
| TU152923 | other | downstream | 217211 | 23299228 ~ 23311986 (-) | False | LOC103039435 |
| TU152750 | other | downstream | 924073 | 22594444 ~ 22605124 (-) | False | LOC111193684 |
| TU152733 | other | downstream | 1051890 | 22473702 ~ 22477307 (-) | True | LOC111193749 |
| XR_002650693.1 | other | downstream | 1098813 | 22376312 ~ 22430384 (-) | False | LOC103026049 |
| TU152441 | other | downstream | 1876463 | 21601244 ~ 21652734 (-) | True | G112778 |
| TU152964 | other | upstream | 17065 | 23552349 ~ 23553064 (-) | True | G113190 |
| TU153063 | other | upstream | 200670 | 23735954 ~ 23793461 (-) | True | G113276 |
| TU153097 | other | upstream | 365839 | 23901123 ~ 23901498 (-) | True | G113304 |
| trnar-ccg_1 | other | upstream | 1466400 | 25001684 ~ 25001756 (-) | True | trnar-ccg_1 |
| TU153804 | other | upstream | 2497611 | 26032895 ~ 26062284 (-) | True | G113826 |
