RNA id: XM_007234289.3


Basic Information

Item Value
RNA id XM_007234289.3
length 642
RNA type mRNA
GC content 0.57
exon number 6
gene id rps10
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 23341712 ~ 23347990 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTGCAGGGGGCGCTGCTGGCTCCGTGACCCGCTCCTCTCTACAGTACCGGGCGAGTTCCAGCAGCGGTCCTTTCCGACTCCGGTCTCTGAGCGAGTGTAAAGATGTTGATGCCCAAGAAGAATCGCATTGCTATCTATGAGCTCCTCTTCAAAGAGGGCGTCATGGTGGCCAAGAAAGATGTCCACCTGGCAAAGCACCCGGAGCTCGCTGACAAGAATGTGCCCAACCTTCACGTGATGAAGGCCATGCAGTCTCTAAAGTCCTGCGGGTACGTGAAAGAGCAGTTCGCCTGGCGCCACTTCTACTGGTACCTGACCAACGAGGGCATCCAGTACCTGAGGGACTTCTTGCACCTGCCACCAGAGATCGTGCCCGCAACCCTCCGTCGCCAGACTCGCCCCGAGACAGCCAGGCCACGCCCCAAGGGTCTGGAGGGAGAAAGACCAGCTCGCCTGGCCCGtggagagggagacagagatgCATACAGGCGATCTGCTGCTCCCCCTGGAGCAGACAAGAAGGCTGAAGCAGGTGCAGGAGCTGCTACAGAATTCCAGTTTAGAGGTGGTTTTGGTCGTGGCAGAGGACAGCAGCCACAGTAATTTTCCACATTGTCTGTATAATAAAGCGATAAATACA

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K02947 RP-S10e, RPS10; small subunit ribosomal protein S10e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152917 lncRNA downstream 97782 23243521 ~ 23243930 (-) True G113146
TU152913 lncRNA downstream 122273 23219209 ~ 23219439 (-) True G113142
TU152840 lncRNA downstream 137238 23204259 ~ 23204474 (-) True G113088
TU152833 lncRNA downstream 278853 23062440 ~ 23062859 (-) True G113082
TU152830 lncRNA downstream 290279 23051009 ~ 23051433 (-) True G113080
TU152946 lncRNA upstream 110710 23458700 ~ 23493687 (-) True G113174
TU152953 lncRNA upstream 155818 23503808 ~ 23504029 (-) True G113181
TU152961 lncRNA upstream 190281 23538271 ~ 23539349 (-) True G113188
TU152967 lncRNA upstream 215597 23563587 ~ 23563807 (-) False LOC103040267
TU152968 lncRNA upstream 222736 23570726 ~ 23570975 (-) True G113194
XM_007234293.3 mRNA downstream 29699 23299234 ~ 23312013 (-) True LOC103039435
XM_007234292.3 mRNA downstream 52829 23281813 ~ 23288883 (-) True LOC103039131
XM_022675552.1 mRNA downstream 67899 23267555 ~ 23273813 (-) True LOC103041502
XM_022675082.1 mRNA downstream 248747 22670156 ~ 23092965 (-) True LOC103024805
XM_022675550.1 mRNA downstream 696121 22611506 ~ 22645591 (-) True mst1
XM_007234284.3 mRNA upstream 56276 23404266 ~ 23425716 (-) True spdef
XM_015601583.2 mRNA upstream 56276 23404266 ~ 23411221 (-) False spdef
XM_022675563.1 mRNA upstream 112528 23460518 ~ 23478491 (-) True c13h6orf106
XM_022675564.1 mRNA upstream 181207 23529197 ~ 23535284 (-) True snrpc
XM_007234283.3 mRNA upstream 192718 23540708 ~ 23544294 (-) True sys1
TU152923 other downstream 29726 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 736588 22594444 ~ 22605124 (-) False LOC111193684
TU152733 other downstream 864405 22473702 ~ 22477307 (-) True LOC111193749
XR_002650693.1 other downstream 911328 22376312 ~ 22430384 (-) False LOC103026049
TU152441 other downstream 1688978 21601244 ~ 21652734 (-) True G112778
TU152964 other upstream 204359 23552349 ~ 23553064 (-) True G113190
TU153063 other upstream 387964 23735954 ~ 23793461 (-) True G113276
TU153097 other upstream 553133 23901123 ~ 23901498 (-) True G113304
trnar-ccg_1 other upstream 1653694 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 2684905 26032895 ~ 26062284 (-) True G113826

Expression Profile