RNA id: TU152961


Basic Information

Item Value
RNA id TU152961
length 1079
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G113188
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 23538271 ~ 23539349 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagactacttttaagacagaacagccctattatcacgatatggatttttaatatcatgatatttctgtgtcacgatatattgtatacaatataatattgcccacccctaatggacATACAATAATAGAGATTTTAGCCCTAGGcactaccacttagccctaacCTTCTGTTTTGATCATTCACACCTAGGGGTAGAATGTCTTTATTCTTGTTAGGCTAGAGGAGTAGGTAAGGGGAAGTGTTAGAGCCACGTGACTCTTTAAACTGAGATTATTCAGAGGCAAACTTCAAACAGAGGGCTATGAAAATTGCTGACAAGATGCCACTGGCACAAGCGACTACATAAACCCAGAAATCTGAGTatttccttgttaaaaaatatgagAACTACTATATAACCATAGTTTAATTCGTCGTTTCAATGTTTATTGCCATTTTCTTTagaacaagcataaaaaaggtctagtagtttgtctcagtgtCTAAAGACACTGTTAAGTATCtaattctaaataaacaaagaaagtaAAGTTGTACTAACTGTCTAGTCGTGAAATTGTCATGTTCAACACAAACAGTACCCAAGCAAATGAGAAGCTTgcctataaaaaaaagtttgtataTGTGTTTTTCCAATGGAAGTACGCTGGCACAGATTGACTGCTTCTGTACATCATTTTCATTTGATTTATATTGTTGgataattttgttttgttttgtattgttcgCTTCTTTATTCTGAAATTCCATTGACTGAAAGTGATTTTACCCAAAGTACagtcaaaagtcaaaaagtTGTAAgacattcttttatttaaaatattaaatggaaATTAGACGAAAGAGAagatttatattgtattttattacactGTATTGCCAAATGTATTTGCTGGCCTGCATTGCTTTTGGTGATGAAAGATGTCCATGAGCATCTCTACGCTCTACTGTTGTTAATCTAGTCTGAAGACGAAGCAGTATACATGACTgactgctgcttttattatatatctgtGGAGATGGAAGTGATTAAAACCTGAGTTGAATGATTTAAATGGTTGAtcgaataaaataaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152953 lncRNA downstream 34242 23503808 ~ 23504029 (-) True G113181
TU152946 lncRNA downstream 44584 23458700 ~ 23493687 (-) True G113174
TU152917 lncRNA downstream 294341 23243521 ~ 23243930 (-) True G113146
TU152913 lncRNA downstream 318832 23219209 ~ 23219439 (-) True G113142
TU152840 lncRNA downstream 333797 23204259 ~ 23204474 (-) True G113088
TU152967 lncRNA upstream 24238 23563587 ~ 23563807 (-) False LOC103040267
TU152968 lncRNA upstream 31377 23570726 ~ 23570975 (-) True G113194
TU152977 lncRNA upstream 83715 23623064 ~ 23623381 (-) True G113203
TU152982 lncRNA upstream 100792 23640141 ~ 23640359 (-) True G113208
TU153039 lncRNA upstream 125297 23664646 ~ 23762140 (-) True G113260
XM_022675564.1 mRNA downstream 2987 23529197 ~ 23535284 (-) True snrpc
XM_022675563.1 mRNA downstream 59780 23460518 ~ 23478491 (-) True c13h6orf106
XM_007234284.3 mRNA downstream 112555 23404266 ~ 23425716 (-) True spdef
XM_015601583.2 mRNA downstream 127050 23404266 ~ 23411221 (-) False spdef
XM_007234289.3 mRNA downstream 190281 23341712 ~ 23347990 (-) True rps10
XM_007234283.3 mRNA upstream 1359 23540708 ~ 23544294 (-) True sys1
XM_007234295.2 mRNA upstream 19752 23559101 ~ 23563786 (-) True LOC103040267
XM_007237294.3 mRNA upstream 50639 23589988 ~ 23597746 (-) True LOC103047745
XM_022675574.1 mRNA upstream 414046 23953395 ~ 23990833 (-) False tnnt2
XM_022675571.1 mRNA upstream 414046 23953395 ~ 23990826 (-) True tnnt2
TU152923 other downstream 226285 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 933147 22594444 ~ 22605124 (-) False LOC111193684
TU152733 other downstream 1060964 22473702 ~ 22477307 (-) True LOC111193749
XR_002650693.1 other downstream 1107887 22376312 ~ 22430384 (-) False LOC103026049
TU152441 other downstream 1885537 21601244 ~ 21652734 (-) True G112778
TU152964 other upstream 13000 23552349 ~ 23553064 (-) True G113190
TU153063 other upstream 196605 23735954 ~ 23793461 (-) True G113276
TU153097 other upstream 361774 23901123 ~ 23901498 (-) True G113304
trnar-ccg_1 other upstream 1462335 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 2493546 26032895 ~ 26062284 (-) True G113826

Expression Profile