RNA id: XM_022675082.1


Basic Information

Item Value
RNA id XM_022675082.1
length 4942
RNA type mRNA
GC content 0.51
exon number 40
gene id LOC103024805
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 22670156 ~ 23092965 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accaccaccacctcctcctcttcctcctcctcctcctctcctccctccctccttccttccccctctctctcagtcAGTCAGTTTGAGGTTGAGCTTTAACGCTGCTCGGATCTTCAGCCGCTCGCTGCTCTTCTCCGCCATCGCTCTGCTCGGAGAACCAAGCCGAGAACCTGAGCAGCGCCAACTCTGAAGAACCCACCTGAGAACCCCCCCCCCtgacttcttcttcttccttttcctcctttctctctctctcttcctctccctctgtctctctgtctctctgtgtgatCCTCTCTCTGCCACTTCCTTgcatttttaatggaaaatggcGATCCGCGCGCCGTCCTCGAGCGTCTTGTGCCTGCTCTGCGCACAGACGGCGCTTCTCTGGCTCGCGCTGTCCTCCTCACCTGCGGATGCCATCCTCCGCTTCCCGCAGCACTACACgaTGATGCACTGGGCGAGCCGTATCGAGAAGGAGCTGGACAAAGTGCTGCCGCAGGTGACCGGAGCCCAGCAGATGAGATCTATTTATAATGAGAAGCGGAGTCAGTTTGATGTGAAGAGGAACTCGCCCAAAGAACTGGTGGAGAGAGTGGCTCGAGATATCGCCAAGCTGCTGAACAGCAAGAGGAAAGCTCTGGAGAGGCTGGCTAGAGAAGCGGAGCAGATCCAGACAGAGCATCCTTGGCAGGACAGCATCAAGgAGAGTGATATTCAGTACTATGACTCCAAATCTGACTCTGATTATTCTGACGATGGAGACGATGAGAACCTGTTGGACAACCCGTACTCTCTTCCTCTGGAGTTTGTGCACGACCCCAACTTCAAGAACAAAGTCAACTACTCCTACACCGCCGTGCAGATCCCCACCGACATCTACAAGGGCTcTCCCACTATTCTGAATGAGCTGAACTGGACTCAGGCGCTGGAGCGAGTGTTCATAGATAACAGTCGAGAAGATCCCTCACTCCGCTGGCAGGTGTTCGGAAGTGCCACCGGCGTCACCAGATATTACCCAGTTGGAGGTGAACCTGCACCTGTAGCTGTACCTGTACCTGCAGCTGTagctgtacctgtacctgtatcTGTAGCTGCACCTGTACCTAGCACTGTagctgtacctgtacctgtagctgtacctgtacctgtacctgtatcTGTAGCTGCACCTGTACCTGTATCTGTAGCTGCACCTGTACCTGTAACTGTAgctgtacctgtagctgtagCTGTACCTGTATCTGTAGCTGCACCTGtagctgtatctctctctgtacttgTAGCTGTATCTGTACCCATATTTGTACCTGTAGCTGCACCTATACCTGTACCTGTGCCTGTAGCTGTAGCTGTGCCTGTAGCTGCACCTGTACCTGAAGCTATAACTGTAGTTGCACTTATACCTGTACCTGTAACTGTAGCTGCACCTGTagctgtacctgtacctgtagctgtacctgtagctgtacctGTATCTGTAGCTGCACCTGTACCTGCAGCTGTagctgtacctgtacctgtacctgtacctgtagctgtagCTGTACCTGTAGCTGCACCTGTACCTGCATCTGTAACTGTAgctgtacctgtagctgtacctgtacctgtatcTGTAGCTGCACCTGTAGCTGTagctgtacctgtacctgtatcTGTAGCTGCACCTGTACCTGTATCTGTAGCTGCACCTGTagctgtacctattataagaAGCAAGAACACGTTTAAcgactttgaaagtatcctcgaGTACATCCAGGGAGCTTCTTCTCCTAAAGACATGGTCATCATTGTGGATGTgagtggcAGCGTGAGTGGACTGACGTTGAAGCTGATGAAGACCTCTGTGATTGAGATGCTGGACACACTGTCCGATGATGACTATGTAAATGTAGCGCAAtttAATGAAAAGGCGGACGCCGTGGTCTCCTGCTTTAAGACGCTGGTTCAGGCTAACGTCAAGAACAAGAAGATCTTTAAGGAGAAGGTGATGCACATGCAGGCCAAGGGGACGACCGACTACAAGTCTGGATTCAAGTTTGCTTTTGAGCAGCTGCTAAACGAGAGCACCGCACCGAGGGCAAACTGCAATAAGATGATAATGATGTTCACAGATGGAGGAGAGGACCGAGCTCAAGATATTTTCGAGATGTACAATTGGCCCAATAAAACAGTTCGGGTTTTCACCTTCTCTGTAGGCCAGCACAACTATGACGTCACTCCGTTGCAGTGGATCGCTTGCGCCAACAAAGGATACTACTTCGAGATCCCTTCCATCGGAGCAATCAGAATCAACACTCAGgaATATCTGGATGTTCTGGGGAGGCCGATGGTGTTAGCTGGCAACCGGGCCAAACAAGTGCAGTGGACCAACGTCTACCAGGACGCTCTGGGTTTGGGGCTGGTCATTACTGGGACGATGCCGGTCTTCAATCTTACCGTTGATGGGGACTCGAAGAATCAGCTCATCCTGGGGGTTATGGGTGTAGATATAGCACTCAGTGAAATTAAGCAGCTCACGCCACGGTATAAGCTTGGAGCCAATGGTTACACATTTGCAATTGATCCCAATGGCTATGTGCTTCTGCACCCCAACCTCCAGCCTAAGATCCCTAACTTCAGAGAGCCGGTGACGCTGGATTTCCTGGATGCGGAGCTGGTGGACAGCAGTAAGGAGGAGATCCGTCGACAGATGATTGACGGCAGACCCGGACAGAAGAAGATCAAGACGTTAGTAAAGTCTGTAGACAAGCGCTACATTGATCAGGCTTTAAGGACATACATATGGACACCAGTGGAGGGCACAGATTACAGTCTGGGTTTGGTGCTGCCGACCTACAGTGAGAGCCACATCAGAGCCAACCTGACCGATCAGATCCAGCAGGTGCAGTTAAAAGACCACAAGGATTTTGAATCTCTTCTGCCACACACTTTTGAATCAGAGGGACATGTGTTGATTGCCCCCAGGGAATACTGCAAGGAACTGGAGTTAACCAGCAACAACACGGAGTTCCTGCTGAACTTCATCGCTCTGATGGAAAAAGTCACACCAGACTCCAAACAATGTGACAACTTCCTGCTGCACAACCTGATCCTGGACACGGGCATCATCAGACAGCTGGTGGAGAAAGTGTGGAAAAACAGGGATCTCAACACgtaTGGGTTTCTGGCTGTGTTTGCAGCTACAGATGGAGGCATCACTCGCATCTTTCCGAATAAGGCTGCTGAAACCTGGGAGGAGGATCCAGAGCCGTTTAATGCCAGTTATTATCGCCGCAGTCTGGATAACAAGGGCTACATCTTCAGAGCACCGTATCGGAACTTGAATTCTCTGCTACAAGACCAAGAGAACGACACCATCGGCATCCTGGTCAGTACAGCCGTGGAGATCACAGTAGGGTCCAGAACCATCAAACCAGCTGtggtgGGTGTAAAGATGGACCTCGAGGCCTGGACTGCAAAATTTAAGATCCTTGCCAGTAACCACACAGACAACACTCGGCAGGGCTCTCAgatgTGTGGACCAACCACTGGCTGTGAAATGGACTGTGAGGCTCATGAGGACTTGCTGTGTTACCTGATAGATGACGGTGGATTCCTCATCATGTCCAATCAGATCAACGATATAAACAAGATTGGGATGTTCTTCAGCGATGTGGACCCGGCCCTGATGTACGCACTTTACAACAACTCCTTCTACTTGCGCAAGCAGTCGTTTGACTTCCAGTCGGTGTGTGAGCCCGTCCCCAGCAGCAACACCGGGGCGGCTCCTCGAGGAGTATTCGTGCCCACTATCGCCGACTTACTCAACGTGGCCTGGTGGACTTCAGCAGCAGCTTGGTCAATCTTCCAGCAGATGCTTTATGGTTTTGCCTACCACAGCTGGTTCATTACAGaTGAAGTTGAAGCAGACAGCATGGACTCCAGAGAAACCAGCTGTGTCACAGTACAAACACAGTTCTACTTCGGGAACATCAGCAGCTCCTACAGCATAGTGCAAGACTGTGACAACTGCTCCAGATTAATCCACGCCAAGAGATTAAATAACACCAACCTGCTGTTTGTGGTGGCTGAGAAGCTGCCCTGCAACACCTGCGATATAGAAAAGTTGTCTCAGGATGAAGTAGAGTTCAAGCAAGAAGATCCCTGTATGGACCTGCCGCCACCACGATATAGAAAAGGACCCTCCACCTGCTTCGATTACAACATAGCAgagaatACGACAGACTGCGGGCGAGGATACTCCTTCCGCCCGTCGATCTACACTTtactcctcctccagctccctctcctctctctggtGTCCCACCCCCACATTTTACCCTTCTCCCTTTAACTTCCTCCTCCGCCGACCTCCCTCTCCTCTCTGTAATTCTGCATTTCTCCTTTATCTCCCCTCGCTCTAGTCATAGGTATTAAAGGGACTTCCCGCTGCCCTTAATACGGAAGCCCGGCATACTGCTTCATCCACTTAGCTTCACAGGTTGTTGCTTAGTGACCGTTGCAGAACTTTTATCGTCTCCTGCCAATCAGCAGCTTTTTTTCGTGGGAGGAGGAGCTAGAGGTTTCTTTGAGGAAGAAGAAGCTGAGGAAGTCAATGACGCATTTGACCGTCGGGCGGCGACGAAGCCGCTGTGGGAGGGAAGACGAGCGTCTGGAACCGCGACGACGTGGGAGGGGCAGTGCGGAAGAACATGGATCGAACGTTCCCTCGCTGTACAGGGGGAAAATCGCGTTTTTGTCAGACTCTGCCTTTACAGTTCAAgtcatcctcctcatcctcctcatctTCATCCTTTACAGGCCAGCGACTGCCTCCGGTCTCGCTGCTTTGCTGCTTGCCTAATTTGACATGGGGCTACAGAACCTTCTGCCATTTTCTAGAAAAAtcagtaatgcaatcacagaACTTTAATCAGCTAacgggaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152760 lncRNA downstream 3811 22662581 ~ 22666345 (-) True G113022
TU152743 lncRNA downstream 86133 22579473 ~ 22584023 (-) True G113008
TU152729 lncRNA downstream 219044 22390203 ~ 22451112 (-) True G112994
TU152717 lncRNA downstream 285813 22346630 ~ 22384343 (-) False G112988
TU152719 lncRNA downstream 308197 22361218 ~ 22361959 (-) True G112990
TU152840 lncRNA upstream 111294 23204259 ~ 23204474 (-) True G113088
TU152913 lncRNA upstream 126244 23219209 ~ 23219439 (-) True G113142
TU152917 lncRNA upstream 150556 23243521 ~ 23243930 (-) True G113146
TU152946 lncRNA upstream 365735 23458700 ~ 23493687 (-) True G113174
TU152953 lncRNA upstream 410843 23503808 ~ 23504029 (-) True G113181
XM_022675550.1 mRNA downstream 24565 22611506 ~ 22645591 (-) True mst1
XM_022675551.1 mRNA downstream 24565 22612258 ~ 22645591 (-) False mst1
XM_022675111.1 mRNA downstream 65018 22594412 ~ 22605138 (-) True LOC111193684
XM_022675547.1 mRNA downstream 109867 22516156 ~ 22560289 (-) False LOC103023031
XM_022675546.1 mRNA downstream 109868 22516156 ~ 22560288 (-) True LOC103023031
XM_022675552.1 mRNA upstream 174590 23267555 ~ 23273813 (-) True LOC103041502
XM_007234292.3 mRNA upstream 188848 23281813 ~ 23288883 (-) True LOC103039131
XM_007234293.3 mRNA upstream 206269 23299234 ~ 23312013 (-) True LOC103039435
XM_007234289.3 mRNA upstream 248747 23341712 ~ 23347990 (-) True rps10
XM_007234284.3 mRNA upstream 311301 23404266 ~ 23425716 (-) True spdef
TU152750 other downstream 65032 22594444 ~ 22605124 (-) False LOC111193684
TU152733 other downstream 192849 22473702 ~ 22477307 (-) True LOC111193749
XR_002650693.1 other downstream 239772 22376312 ~ 22430384 (-) False LOC103026049
TU152441 other downstream 1017422 21601244 ~ 21652734 (-) True G112778
TU152445 other downstream 1085107 21581745 ~ 21585049 (-) True LOC103040822
TU152923 other upstream 206263 23299228 ~ 23311986 (-) False LOC103039435
TU152964 other upstream 459384 23552349 ~ 23553064 (-) True G113190
TU153063 other upstream 642989 23735954 ~ 23793461 (-) True G113276
TU153097 other upstream 808158 23901123 ~ 23901498 (-) True G113304
trnar-ccg_1 other upstream 1908719 25001684 ~ 25001756 (-) True trnar-ccg_1

Expression Profile