G113080


Basic Information

Item Value
gene id G113080
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 23051009 ~ 23051433 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152830
attatagcacaaacctcgagtgtattattgcttaataatACCTTAGTTccattattactgtttattgaaagattttgagttaaagaggaggagaaaataggatctgtttggttataaacactctgtttgtagcttcACTGTTTacgtacatggagagcttcggttacattgcattactggctgataacggcactcgcAGAAcacttctcagccaatcacattggaGCATTGAACTAACCTAGAACTCTGCTTACTTTAAAAGCTAGCTTGAAACTTGATTTACGAATAAAGCGATAGATAGAGAAGGAAAGATAGATTGCTAGAAGATAGAGACACTTTACTAAGCTCACCTCCCTATTAACCCGCCCATCTGTATATAAACACCACCCACcactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152830 True 396 lncRNA 0.38 2 23051009 23051433

Neighbor

gene id symbol gene type direction distance location
mst1 mst1,LOC107707265,LOC107666157,LOC107595414 coding downstream 405418 22611506 ~ 22645591 (-)
LOC103023031 gnb1,gnb1b,LOC105895937,LOC108272010,LOC107666091,LOC107595416,LOC103044197 coding downstream 490720 22516156 ~ 22560289 (-)
LOC103023872 rbm5,LOC108433690,LOC108271979,LOC107696464 coding downstream 579417 22455022 ~ 22471592 (-)
LOC111193663 LOC108433669 coding downstream 600610 22445889 ~ 22450399 (-)
LOC111193748 LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468 coding downstream 684311 22242530 ~ 22366698 (-)
LOC103041502 NA coding upstream 216122 23267555 ~ 23273813 (-)
LOC103039131 LOC108433682 coding upstream 230380 23281813 ~ 23288883 (-)
rps10 rps10,LOC107595410,LOC102793608 coding upstream 290279 23341712 ~ 23347990 (-)
spdef LOC108271967,LOC108433664,LOC107744410,LOC107724522,LOC107595455,LOC107587644,LOC107666045,LOC107696418 coding upstream 352833 23404266 ~ 23425716 (-)
c13h6orf106 c11h6orf106,cunh6orf106,zgc:101577,LOC107595408,LOC107724532,LOC107666165 coding upstream 409085 23460518 ~ 23478491 (-)
G113078 NA non-coding downstream 23986 23026750 ~ 23027023 (-)
G113075 NA non-coding downstream 115831 22934087 ~ 22935178 (-)
G113074 NA non-coding downstream 155328 22894864 ~ 22895681 (-)
G113038 NA non-coding downstream 281570 22769236 ~ 22769439 (-)
G113037 NA non-coding downstream 281931 22767041 ~ 22769078 (-)
G113082 NA non-coding upstream 11007 23062440 ~ 23062859 (-)
G113088 NA non-coding upstream 152826 23204259 ~ 23204474 (-)
G113142 NA non-coding upstream 167776 23219209 ~ 23219439 (-)
G113146 NA non-coding upstream 192088 23243521 ~ 23243930 (-)
G113174 NA non-coding upstream 407267 23458700 ~ 23493687 (-)
LOC111193684 NA other downstream 445871 22594412 ~ 22605138 (-)
LOC111193749 NA other downstream 573681 22473702 ~ 22477328 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other downstream 620625 22376312 ~ 22430384 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other downstream 1398275 21601244 ~ 21652734 (-)
LOC103040822 LOC108429994 other downstream 1465530 21581745 ~ 21585479 (-)
LOC103039435 tusc2,LOC108433681,LOC103039435,LOC107696420,LOC107595412,LOC107724521 other upstream 247795 23299228 ~ 23312013 (-)
G113190 NA other upstream 500916 23552349 ~ 23553064 (-)
LOC103040267 LOC108433657 other upstream 507668 23559101 ~ 23563807 (-)
G113276 NA other upstream 684521 23735954 ~ 23793461 (-)
G113304 NA other upstream 849690 23901123 ~ 23901498 (-)

Expression


Co-expression Network