RNA id: TU153332


Basic Information

Item Value
RNA id TU153332
length 695
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G113471
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 24412197 ~ 24419623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTATTGATTCAATATGcttagtacttttaatatggtttaacttaaaattagaaagaagGGATACGGAcacataacggtaatgagaatttccatatatttttgatttaatttatataaaaataattttatatgatgatgaaAACAATTGATCCATACAGTACTCCCTATTCACTTTACACACAATATCAGAGTTTTTATGAATtaagtattgattttaaaaaaattgtcatggaCATGTTCCCTGCAGCTTCATGAGAATCACCCatatatagtcttcaatattaaatgtaattaaatgtattaaatgtaaaaaagaatcatgaaaaagaaagaaaatacattaaataagaaaGAGGAGTTTCCATatttttgactggtgctgtaaaaGCATTAAACGTGAGAGTGTAGAAGAGCTCAACTTTCAACATTAACCGATGTTGCCTATGACGCAGGCTTAAATAAAGGTTATTTTAAGGTTGCTTTTCCATCATCAACCTTAAAAAGAGGTGATGCAACCAAAGCACCGCTGACTGTACCTGCTCATGGCTCTTGGATGTGGGGATAATAATGGCTAAAATGCAGATAAGCTGGAAAATAGCTCCAAGAAAGAGGCCATAACGCAGGACACTCTCAAAGAAGGTGGGCTCAGGAACCTCGGGTGGGGAGAGGTCCAGGTCTCCTGACATGATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153220 lncRNA downstream 123248 24284953 ~ 24288949 (-) True G113399
TU153208 lncRNA downstream 157929 24254019 ~ 24254268 (-) True G113393
TU153181 lncRNA downstream 364777 24047176 ~ 24047420 (-) True G113367
TU153178 lncRNA downstream 395396 24013049 ~ 24016801 (-) False tnni1
TU153112 lncRNA downstream 465476 23946107 ~ 23946721 (-) True G113318
TU153391 lncRNA upstream 442958 24858264 ~ 24858555 (-) True G113525
TU153401 lncRNA upstream 521450 24936756 ~ 24940890 (-) True G113535
TU153408 lncRNA upstream 553921 24969227 ~ 24974548 (-) True G113542
TU153412 lncRNA upstream 566117 24981423 ~ 24981745 (-) True G113544
TU153415 lncRNA upstream 568382 24983688 ~ 24985634 (-) True G113547
XM_022675575.1 mRNA downstream 373370 24027185 ~ 24038827 (-) True csrp1
XM_007237592.3 mRNA downstream 396338 24004549 ~ 24015859 (-) True tnni1
XM_022675574.1 mRNA downstream 421364 23953395 ~ 23990833 (-) False tnnt2
XM_022675581.1 mRNA upstream 6851 24422157 ~ 24459170 (-) True LOC103034389
XM_022675589.1 mRNA upstream 467587 24882893 ~ 24894218 (-) True nol11
XM_007252129.3 mRNA upstream 570405 24985711 ~ 24999893 (-) True c13h17orf58
XM_007252134.3 mRNA upstream 680931 25096237 ~ 25115696 (-) True cep95
XM_007252138.3 mRNA upstream 790345 25205651 ~ 25209311 (-) True ten1
TU153097 other downstream 510699 23901123 ~ 23901498 (-) True G113304
TU153063 other downstream 618736 23735954 ~ 23793461 (-) True G113276
TU152964 other downstream 859133 23552349 ~ 23553064 (-) True G113190
TU152923 other downstream 1100211 23299228 ~ 23311986 (-) False LOC103039435
TU152750 other downstream 1807073 22594444 ~ 22605124 (-) False LOC111193684
trnar-ccg_1 other upstream 586378 25001684 ~ 25001756 (-) True trnar-ccg_1
TU153804 other upstream 1617589 26032895 ~ 26062284 (-) True G113826
TU153885 other upstream 1930834 26346140 ~ 26393197 (-) True G113888
XR_002650695.1 other upstream 2902102 27317408 ~ 27319945 (-) True LOC111193752
TU154209 other upstream 3709930 28125236 ~ 28129856 (-) True G114134

Expression Profile