LOC111193690


Basic Information

Item Value
gene id LOC111193690
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26633723 ~ 26636302 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153927
gctaaatgctaaagctaacacGCACAGGATTATGGGATCTTGAGTTCGGAAACCCACAGGAAACATGGCCAGCGGGAGAAATTACTGTTATTGGGATTTTACTGCTCGTAATGTcctctttgtttgtgtgtttggagcACCAACTGACAAGGAAGACTTTTACTCCCATCTCTCAAAAACTCATCCCTGTACTGTCCATCCATAGTCCAGAGCCTATAGGTGATGCggctgattggttagactgatGCAGGGGGATGACTCTTTCTCGTTCCACGCTCCCTGGCCAGCCAGTCAGAGAAATGGACACGTTTGGCATATTTGCTGTTCATTTGTTGCTCTTGTATAATGTTTTTGGTTAGAGgagatttttgtattttcttatatatata
>XR_002650627.1
AAACATGGCCAGCGGGAGAAATTACTGTTATTGGGATTTTACTGCTCGTAATGTcctctttgtttgtgtgtttggagcACCAACTGACAAGGAAGACTTTTACTCCCATCTCTCAAAAACTCATCCCTGTACTGTCCATCCATAGTCCAGAGCCTATAGGTGATGCggctgattggttagactgatGCAGGGGGATGACTCTTTCTCGTTCCACGCTCCCTGGCCAGCCAGTCAGAGAAATGGACACGTTTGGCATATTTGCTGTTCATTTGTTGCTCTTGTATAATGTTTTTGGTTAGAGgagatttttgtatttt

Function

GO: NA

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU153927 True 389 lncRNA 0.43 3 26633723 26636302
XR_002650627.1 False 317 lncRNA 0.44 3 26633735 26636242

Neighbor

gene id symbol gene type direction distance location
gcnt7 NA coding downstream 331328 26292415 ~ 26302395 (-)
eya2 eya2,LOC107666141,LOC106565282 coding downstream 427153 26152447 ~ 26206570 (-)
LOC103030576 LOC108431845,LOC107696435,LOC108271496,LOC107560513,LOC107666154,LOC100690876 coding downstream 532202 26091651 ~ 26101521 (-)
LOC103035347 si:ch211-59d13.2,slc12a5,LOC107744354,LOC107740262 coding downstream 614276 25711231 ~ 26019447 (-)
LOC103025798 LOC108424712,LOC103354899,LOC108435855 coding downstream 1052797 25578698 ~ 25580926 (-)
cdh22 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding upstream 87495 26723797 ~ 27069232 (-)
znfx1 NA coding upstream 657257 27293559 ~ 27317236 (-)
LOC111193752 NA coding upstream 681106 27317408 ~ 27319945 (-)
ddx27 ddx27,LOC107587605,LOC107681294,LOC107553908 coding upstream 687567 27323869 ~ 27344463 (-)
snrpb snrpb,LOC108272150 coding upstream 711165 27347467 ~ 27352451 (-)
G113917 NA non-coding downstream 496 26632977 ~ 26633227 (-)
G113912 NA non-coding downstream 3963 26629483 ~ 26629760 (-)
G113915 NA non-coding downstream 17519 26615936 ~ 26616204 (-)
G113913 NA non-coding downstream 39027 26594421 ~ 26594696 (-)
G113901 NA non-coding downstream 147711 26485683 ~ 26486012 (-)
G113942 NA non-coding upstream 52427 26688729 ~ 26689126 (-)
G113944 NA non-coding upstream 180870 26817172 ~ 26879547 (-)
G113949 NA non-coding upstream 489863 27126165 ~ 27126369 (-)
LOC111193691 NA non-coding upstream 524460 27160762 ~ 27189599 (-)
G113956 NA non-coding upstream 561601 27197903 ~ 27198191 (-)
G113888 NA other downstream 240526 26346140 ~ 26393197 (-)
G113826 NA other downstream 571439 26032895 ~ 26062284 (-)
ctsa NA other downstream 947146 25635304 ~ 25686577 (-)
tnni1 tnni1,tnni1b,LOC103040607,LOC106582713 other downstream 2616922 24004549 ~ 24016801 (-)
G113304 NA other downstream 2732225 23901123 ~ 23901498 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 1488934 28125236 ~ 28129856 (-)
G114270 NA other upstream 1711963 28348265 ~ 28361481 (-)
G114304 NA other upstream 1947091 28583393 ~ 28584959 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 2511134 29147436 ~ 29162803 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 2642514 29278816 ~ 29284782 (-)

Expression


Co-expression Network