RNA id: TU154380


Basic Information

Item Value
RNA id TU154380
length 447
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G114225
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28162922 ~ 28164438 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAATGTAGACAATAAAGCACAGACAAAAACGAGAGAAAGTTCTACCTTTTCTTTCAGACGCTGCTTAAGAGCACTGATACGGGCCGTACGGTTCTCAGTGCTCACTTCCATTTTGTGATTCAGCTTCTCCTCTGCCATCTTGCTGTAGTTGTTATTGACCTCCTGGGCTTTGTTCAGAACCTCTCTCTCATGCTCCCGCTTCTCAGccagctgcttcaggacctgctTCTCCTGAATccttctcctctcctctgcgGCCTCCAGTTTCTTCTGCAGTTCTCCCAGTGTGGGCTCCTTCTTGTGGGCTCCTAGAGCCAAAGTCTGGGGCCGGTCTGGTGACAGATCAGTGGGGCTCTTCAGGATGACCTCAAAGGCCTGACCAGAGGTTCGCTTGTTCAATGACTTCACCTCCATGTCTGCTGAGAAAGaaccaatcaattaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154219 lncRNA downstream 31456 28130319 ~ 28131466 (-) True G114143
TU154220 lncRNA downstream 31456 28130319 ~ 28131466 (-) False G114143
TU154171 lncRNA downstream 166902 27993938 ~ 27996020 (-) True G114102
TU154164 lncRNA downstream 211625 27951020 ~ 27951297 (-) True G114096
TU154155 lncRNA downstream 287766 27811273 ~ 27875156 (-) True G114087
TU154383 lncRNA upstream 7241 28171679 ~ 28171970 (-) True G114228
TU154400 lncRNA upstream 52763 28217201 ~ 28217422 (-) True G114245
TU154431 lncRNA upstream 178746 28343184 ~ 28346471 (-) False G114269
TU154432 lncRNA upstream 178746 28343184 ~ 28346471 (-) False G114269
TU154435 lncRNA upstream 178746 28343184 ~ 28346471 (-) False G114269
XM_015606721.2 mRNA downstream 270836 27674707 ~ 27892086 (-) False tox2
XM_007252680.3 mRNA downstream 270837 27674707 ~ 27892085 (-) False tox2
XM_015606720.2 mRNA downstream 270837 27674707 ~ 27892085 (-) False tox2
XM_015606719.2 mRNA downstream 270837 27674707 ~ 27892085 (-) True tox2
XM_015606722.2 mRNA downstream 270839 27674707 ~ 27892083 (-) False tox2
XM_022675630.1 mRNA upstream 134256 28298694 ~ 28323285 (-) True LOC103034708
XM_007253410.3 mRNA upstream 164285 28328723 ~ 28426989 (-) True kif5a
XM_022675633.1 mRNA upstream 289634 28454072 ~ 28473390 (-) False mbd6
XM_007253406.3 mRNA upstream 289634 28454072 ~ 28473390 (-) True mbd6
XM_022675634.1 mRNA upstream 328068 28492506 ~ 28515586 (-) True mars
TU154209 other downstream 33066 28125236 ~ 28129856 (-) True G114134
XR_002650695.1 other downstream 842977 27317408 ~ 27319945 (-) True LOC111193752
TU153885 other downstream 1769725 26346140 ~ 26393197 (-) True G113888
TU153804 other downstream 2100638 26032895 ~ 26062284 (-) True G113826
trnar-ccg_1 other downstream 3161166 25001684 ~ 25001756 (-) True trnar-ccg_1
TU154457 other upstream 183827 28348265 ~ 28361481 (-) True G114270
TU154464 other upstream 183827 28348265 ~ 28361481 (-) False G114270
TU154468 other upstream 183827 28348265 ~ 28361481 (-) False G114270
TU154507 other upstream 418955 28583393 ~ 28584959 (-) True G114304
XR_001518740.2 other upstream 1114378 29278816 ~ 29284782 (-) False LOC103044966

Expression Profile