RNA id: XM_007245981.3


Basic Information

Item Value
RNA id XM_007245981.3
length 457
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC103022652
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16278005 ~ 16282632 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTggcagccattcagaggtgctgtagtgtgtatgtgcgtCCTTGTATGGGCCCTGGACAGACAAGCAGCAGGAGACCTGACAGAGACCGGCGTCTGACATGAGGCACTTACTGAGCCTTCAGCGGGTGGCCACCCGGGCCTTTAACACTACAGCCAGGCAGATGAAGAACAATGTTCCAGAAAAGCAGAAGCTTTTCCAGGAGGACAATGGCCTGCCAATCCACATCAAAGGAGGAACCACTGATGTGCTTCTCTACCGCTTAACAATGACTCTCACTATTGCTGGCACTGGACTTTCCTTATACTGGCTTCTGGTGGCTGCGATGCCCAAGGGCAAGTCAGACTAAGGACAGCACATGAGATTACTGttaatactttgttacttgaaTTCAATTGAATTCACTTTCATGCTGTAAGAAATacaattccaaataaatgtaTAGGTTGTGTAAAATAA

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5677 lncRNA downstream 1266 16271630 ~ 16276739 (-) True G4192
TU5679 lncRNA downstream 4186 16271630 ~ 16273819 (-) False G4192
TU5617 lncRNA downstream 85475 16191690 ~ 16192530 (-) True G4147
XR_002649858.1 lncRNA downstream 202872 16048039 ~ 16075133 (-) True LOC111192357
TU5531 lncRNA downstream 324596 15952688 ~ 15953409 (-) True G4093
TU5688 lncRNA upstream 5511 16288143 ~ 16289726 (-) True G4196
TU5689 lncRNA upstream 29726 16312358 ~ 16312670 (-) True G4197
TU5708 lncRNA upstream 197703 16480335 ~ 16480650 (-) True G4215
TU5756 lncRNA upstream 255099 16537731 ~ 16537940 (-) True G4245
TU5764 lncRNA upstream 278888 16561520 ~ 16562762 (-) True G4252
XM_007245990.3 mRNA downstream 119344 16148608 ~ 16158661 (-) True LOC103025059
XM_022668837.1 mRNA downstream 135097 16076499 ~ 16142908 (-) False sgsm2
XM_022668836.1 mRNA downstream 135097 16076499 ~ 16142908 (-) True sgsm2
XM_007245996.3 mRNA downstream 346992 15895659 ~ 15931013 (-) False ulk2
XM_007245995.3 mRNA downstream 346992 15895659 ~ 15931013 (-) True ulk2
XM_007245987.3 mRNA upstream 8892 16291524 ~ 16310649 (-) False supt5h
XM_007245986.3 mRNA upstream 8892 16291524 ~ 16310649 (-) True supt5h
XM_007245977.3 mRNA upstream 57089 16339721 ~ 16412599 (-) True plekhg2
XM_007245978.3 mRNA upstream 57089 16339721 ~ 16387468 (-) False plekhg2
XM_007245976.3 mRNA upstream 156986 16439618 ~ 16451002 (-) True LOC103047885
trnae-uuc other downstream 1242919 15035015 ~ 15035086 (-) True trnae-uuc
TU4805 other downstream 1993780 14283623 ~ 14284225 (-) True G3612
XR_002648814.1 other downstream 2145469 14125128 ~ 14132536 (-) False LOC111189390
XR_002649862.1 other upstream 361920 16644552 ~ 16653968 (-) False ercc2
TU6059 other upstream 1701253 17983885 ~ 17998736 (-) True LOC103040336
TU6226 other upstream 1747730 18030362 ~ 18040766 (-) True G4621
trnap-agg other upstream 2118930 18401562 ~ 18401633 (-) True trnap-agg
TU6523 other upstream 3356746 19639378 ~ 19648802 (-) False LOC103038769

Expression Profile