RNA id: XM_007245977.3


Basic Information

Item Value
RNA id XM_007245977.3
length 7944
RNA type mRNA
GC content 0.47
exon number 20
gene id plekhg2
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16339721 ~ 16412599 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctcctatcaCTCCTATGAGTGTGTCACACACAACTACCGCCTCAGgaggacagaaacagagagcagctccacgaCTGCTGAAGTCTGTCCAGATGTGACGGTTCGTTTTTTGAGCGGTTTTGAATTATTCGTTAACGTTACTGAATCTCTACTCAGAGAAAAACTAAGTTACTGCTATGAGGCTTGGtttagtttttaaactgaataaaCTAGTCTTTTAGCTTTATTGAGGAATACTGGAGAAGGTTTCTCCACACGGGGGGTGAGGTTTGGCGAGTTTTCATCCAGAATTTCCTCCTCCTGATGGACTTTCCCCCTCAGTGATCCGCTGAGTGTCGTGTGACCGTTAGCTGAGCCGAGTCTGTGAGCTGACTCAGAGCGGAGATGTGGAGGAGAGCAGACCGCGCTGCCCGGCTTTCAGCACCGTGATTAGGGGCTGAACTCGGACCTGAGCGGAGGCTCCACACCCCCATAACTCCAGAACACGGTTACGGTGTTCAGTGAAGATATGAGAGATACTCACTAATGCGAAGCTGGACGGGTTTTCGGTTACCGGACGAAGCACGAAGAGTTTTTTAAACCGCAGCGCTGGAAACGGAGGGACTTCAGTATCAACGTTACCGTTGATGACTCCAGTTCACACACCTGTAAAGGTTTCTACTTCCTGTGCCATAGCCACACCATGCCTGAGGGAGCGGGCCGGGAAAACCAGAAGAAGTTCAGCAACCAAGctgctAAACGGCCCTCCTCCGTCTCCTCTCTGAGTGGGATTGTGAGCCGGATGGCTTCGTCAGGGGGCGCGTCCCGCGGGAGCTGCACCTCCGTCAACACTGTGTGTTCGGACAGCGACCGTGCGGCCAGCCTCAGCTCCTCAGCCTCCTCCGCCTCGTTGCAGGACgcacactcctcctcctcctcttcctctctgccCTATGGAGCCGTGCCCGCCTACACCTGCCCCCAGCGCCAGGGCTCCGACATCAGCCTGGACCTCACGCCCCTGTCCCTGCTGCCCGGAGCCACGCCCTCCACACCACTGCCCAAACTGTCCCGCCTGCAGAGGGTGGCGCTGGAGATCGTAGAGACAGAGCAGGCCTATGTGAGGGACCTAAAGAGCATAGTGGAGGACTATCTGGGATGCATCATTGACTGTGGAGACCTGCCACTCAAACCAGAGGAGGTCAGCACCCTATTCTGCAATATAGAGGACATCTATGAGTTCAACAGTGATCTTTTGGAAGACCTGGAGCGCAGCTCTCATGCAGCAGCTATAGCCGAATGCTTTGTGGAGAGgAGTGAAGCCTTCGATATCTACACCATCTATTGCATGAATTATCCCAACTCTGTAGCTGTGCTCAGGGACTGCATGAAGAACGAATGCCTGGTGCGCTTCTTCCAGGAGAGGCAGGCCACCCTCTGCCACTCCCTGCCCCTGGAGACCTATCTGCTGAAGCCTGTGCAGAGGATTCTCAAGTACCACCTACTGCTGCAGGAGCTGTCCAAGCACTTTGACAAAAGTGATCCAGGATATGAGGTGGTGGAGGATGCCATCATCACGATGACAGCAGTGGCCTGGTACATTAATGACATGAAGAGGAAACAGGAACATGCTGTTAGACTCCAGGAAATTGAGAGTCTGTTGCTGAACTGGACTGGTCCTGACCTCAGCGGGTTTGGAGAGCTTGTTCTGGAAGGTTCCTTTCGGGTCCAACGAGTGAAAAAGGAGAGGGCCTTCTTCCTCTTTGACAAGATGCTGCTTATTGCAAAAAAGAGGCTGGATCATTTCATCTACAGTACACATATTTTTTGCTGTAACTTGCTCCTAGTTGAAAATATGAAGGACCCTCTCTGTTTTAAAGTGTCAGATCAGACAATACCCAAACAGCAGCACATTGTTCAGGCTAAAAATCAAGAGGAGAAGCGATTGTGGCTGCACTACCTCAAGAGACTAATAGTGGAAAACCATCCTGCATCTCTACCACAGAAGGCAAGGCAGGTTCTTGGTGATACTTTTTGTCAATCTCCACAGTTTGAGCAAGAACCAAACCGCAAGCCGGCCCCTTCTCCTCGGTTGGATGATGCCCATGGTTTTCACAGAGGAAGAAGGCAATCAGAACCCCCAGAGTTCATCTATACTCCCGAGAAGGCCAGGAAAGGTTTGCCGCTTCTTCTGGAAGGGAATGTGACATACCGCCGTGGTCGTAGACAGTCAGCTCCTGCCAAGGATATAGAAGCAGCATTTCAAGGTGTCTCCATAAAAGCTGGCAGTGAGGGTGAGCTGTGCCCACAGGTCGACAGCTTGGGCTCCTCTGGCAGTGCCAGTACACTCGCCTCATCAGTCATTGAAGTGGAATCAGGCAGAGAAACCCTGAGTCTTGCTCAGGATGAGTATGAGGACATTGTTCCTTTGCCTTCACCTCCAACGATGTCTATCACAGAGGAAATAATGCAGTTTATCAACCAGAATTGTGTACGAGAAGGCATGGCAGAGCTGTCCTCTGATATGTATCAGCCCAAGTCAGAGGTCCTGGACCAGTCTACTGAACCACAGGACCAAATTGAACATCAGCACCCAGAGATGATAGAAGAGAAAGATGATCAGCAAAAGATCATTCCTAACAGGCCAGAGGCTGAGCAGAGACACTTAGGTGTTATATTAGATAACGAAGATGACCATGGACATTCTCCTCTTAGTTCACCTGCAGATTTGCTCCCTGAGTGTTCCTTATGCTCACCTTCTCAAGAGTCCAAGTTTAAGTATGAGATGGAAGAGACAACACCCACAGAGTGCAACAGCAGTGCATCTCCTGAACCAGCAGTATTTGCAGAGAGAGACATTCCTGAGGAGGTCGATAGTCAAGTATTTGAAGACAGTATTACCAAAGATGAAATATCTCCTTCAGGAAATAACAAGGAACAAGCCATCATAGAAGCTTCAGCTGAGCCAGTGCCTTCCTTTGATCAGCCTTCCACATCCAGACCTGCAGAGAACCCGCAAGTGCCAAAGGCAGAGGCTGAACAAAAGCTGACCAAAAGTGACAGACAGATCATTGAAAAGATTCGCAACTACTACGAGGCAGCAGAGTCAGAAGCAGTGTTGGAGGATGGGCAGACAATACGGAGAAACAGCTTCTCTGATATCCCCACAGGATTAGTAAAAGATTCAGTGTCACGCTTCAACGTCTTTGTTCACCAGGTCAGTCTGTGTGATTCTGAGAGTGGACGCTCTGATTGCCATGAGAGTGACGCCATGTCCCCGTCCCCCAGCATGCCTGACCTGAATCATAAAACCTTTGATCAGCCTGACTCTACCATTACCTCCTCTCCAGTTTCACAGAGCAACCAAGAGCAAAGTAAgagtgaaaatataaaatatgatgatgatgatgaagatgaggaaCAAATATGTGACTTCAAACCCTGCATGGAGCTCTGgaaggagaaggagagaaaagcTGAGAGTCTAAAAGTTTCTACTTGTAAGGAGGGCAGCTTTGGTAAGACCAAAGATGCATGCAGAATAGACCAACCCTCCACAAATGAGCACTCAGGGACTCATTGTGTGCTCCAACAAGACCATGAAGACGACACAGAGCCAAAAAGTcctaaagaaacaaagaaaactgaCAAAGTAGTACTTCACTCTCAAACTGGCACAAAGGATAAGAGTTCTTCCAACGGGAATCTGGATGGCCTACCCAGTCAAATTAAAGTGGGAAGGTTCTCTCGCCATGGCAAGGTGGTCACCTGCAGTAGGACACTTTACGAAGGGATGACTGACGTACCAGACCTTGGGTTCTTTGAAGGTGGGCCAGTAGATCAGTGCTTAGTAGAGAACTCTGAAAAAATCCTAAGCAAGGTACAGATGCTAGCACGAATGTATACAGCCAAGGCAAGCAGCATGAAGGTTCCGTTACACCAGAAAAGGACACGGGGATCATGGGCAGTGCCCAATAAACTGAATAATCCTCCAAAGTCTCAGCTAGAGGTGCATCAGGCTGAGGTGAAGACACAAAAAGAAATTGCAGaatctgTTGTTCCCTCCCTACCTGAGCCGTTTGGACATGTCATTGTTAGAGAGCAGTTCTCCACAACCTATCACCAAGAAAACTACTGCAAACTTAATGGGCCAAAAGAGCAACAAGAAAATCTGACCATGGATTTGGGAGCTGGTGTGATGTCAAAGAGCGCATTGGAAAGCTCTGTACAAACACAGGAAGACCAAGCAATACTTTATGAGGAAGATGAAGCCATGTCACCTCCACCCTGCTCTGAATCACAAGCGCAAGTTTCCCCCGAATCATCGCTTGACCACTGTGAACCCTTCCCTGAACAGAAGACTAACCACACTTTGTATTCAATCACTGAGGACAATTCAGTAGCCTTAGTAAAAACGATGTGTGTGAATGAAGACCAACCTCAAGCAGAGTTGCCACCTGGGGACCAGTGTTTTATTGATCCAGCAGCAGAACAGTGCCTCAAAGAAGAAACCAACAgtgccaaagaaaaaaaatcaggtttagAGCCAGATGAAAGTAAACCACTCCCTgaagagaaagtgagtgaaatGCAGCAGCAATCACCAGAGAATTACACAGATTGTTCAGTTTCTGGCTCAGAGGATTGCACACAAAGGGCACGTCTGTCCTCTGTTGATCTTACTGAAGCGTCTCCTCCAGTAGCATCAGAACTGAGCTTGAACAACAGTATCTCAGAAACAACTAGCAATAGTGAACCTCAAATGCCCATAGACATGCCTTTCTCTGTGGTATCAGACGATTCAGTTTCTACACAACTCCAGTCTCAGCCCTTACCgacaccaggctgcttcaaAACAGCACCTGCATCTGCATTTGGTCCAGGAGGCACGCATAATCCAGAGCCTTTAAAAAGCAAAGAGACATTACACAAAAGCTTGTCTGTGTTAAGCCCTCTTTCATCACCTCTGCCTTGTGAACCTACTCCAGACAATCTTCCACAGTTCACCAGCCAAAGACCTGACAATCTGCCAACTACCATGGGAAGAAGAAGCCTGCCTGCTAATTGGAACACGCCAACTCTTCCATCCTCCCAAAGACTACCACAGACCCGGCCTTGGTCCAGGGACCAAGATCAGGACACCTCATCATCACCTTCTCTGGGTTCATCCAGTATCCCACCATTGAGTAATAAGTCTTCAGGCATTACATCAAGTACTGCATGTTCTTCAGAAACAAATCGGGCTTCTGCCTTTAGCTCCAATCTTCGGATGCGCTCACCCTCACCTGTTAGAGGCTCTCAGCATCTCAGCTCTTCTGCTCTTGCAAAGTCACTTGCTGCCTCTTGTATTAGTCAGACAATCTCTCAAAGCATGGCCAAAAGAAATGCCCGCCTTCAGGCTACCTCCCCTACTTCCAGTTCCATTCCTTCCCCAGCATCTTCCATGAGATTGAGGTCACCCTCCCCTAAAGCTGTTCCATTGGACTCATTTGTACCATTGGATACTGGCAGCACAGCCCCTGCTGGCCAAATTCCAAAATGTCCCCCTTCCCCTTTTCGCTCTTACAGTCTGCGATCCAGCCCAGCAACTGTACAGTCCCCTCCACCTTATCAAAGCCAACGTTCAGTGTCCCCACCTGTAACCTTTAACCCAGCACCCCCTACTCGCACAAGGTCAGATCATTATGAACATTCTCCCCATACTAGTTTGAATgggaataataataacaacaacaataacagtCAATACAGCAATGGATGGGTCAGTAACCACAAAAAGCCATCATCAAATACAGGCGGAGCTATGTATGCTCATGATCCACATCGAGGAGCCTCTCACAACAAAATTGCTAGACCATTCCTCTCCTCTGAGCCAAACTCGCGTGTACAGTCGCCCTCACCTTCTCCTACACCATCACTTTTCACTCGAATTTGTTCCCCACCACTTGTACAAAGCAATTCTGGTCCATTGATAAGCAAGCCTCCAAATCCACGAACCCCAAGACAAGGTGGGGCCAGCCCGTTTGCACctctgtgtttagagttttcaAGAACAACATCAGCTTGCTCTTTATCCCCAAGTGCGAGTCCTAGGGTAACCTCTCCTCCTCCTATAGGCATCCCTACAAATATATGGTGCATTGCAAGCCCTCAGCCACGAAACCCATCAGCAGCGACCCTTTCCtccccaacaaaagcagaagcAAGCTCTGCTTCAAGAAGCTCCAGAATCACATCTCCACTGTCAGGGGTCTCTTCATGTTCATCATCCAGCACCTCCTCTTCCCAGAACCAGCGGAGACCAAAAGGGAGCAGTTTACCTTTTGTGAGTCTGGCAAGCAGACCACCGAGCCCTTCCAAAAACTGGGCTGAGAACGGACGATGGTCAGTGGATTTGGAGATAGACACAACTAGCCCCCATGGGCGGTCCTACAATGGCACCCCTATTTGTGTCAGCCCGGGCCCTAAGTCCCCTGTCAGGCTGAGTGTTGGAAAGACGAGCATCACCTGGCCAGATGTGCATGAACTGCTGACAAAGTGTAATACAGAGGACAGTTCTGCTGGTGACATCCTGCCCTCTTTGTCTTGCCCTGAAACTGGACTGGAGGACTCTGAACTGGGACAAGCTACTTGCAGAAGTAGCCTTATCTGTGCTTATGTGGCCAGGACCACCCCCGTGCCTGAAAGAGACACTCCCAGTAGGTGCTCTGACGAAGGAAAAAGCGAGGACAATGTGGGAAAACAGGGAGCCAACAAAAGTCTAAAAACCAGCTATGCCACCACTGTCAACCTGCAGATAGCTGGTAGTGGGAGAATAACATCCTTCAGTAATGCACAGGTTAGCCTGACTCAGACCCTGGCACCTGTAACAGACACCCAGGGCATGAGAAGGGTCAGCATAAACGCCTGCAACCTCTCACTGCAGAACTGCAAGAGGGTCTAAGTGGAACTCCTCCTGAGGCCATTTGCTTTAAAGACACTTTAACAGGCACTTTAGCATATAGCAAAGGGGTCAGTTAGAGATCCAGGTTCAATTCACTGAGCTGTAGTGCCAATTTACGGGTTTCAAGAAACTTATGCTATGATAAGTGATCATTCCTACTCATTGATTGCCAACGGTGCTTTAAATACAATGCATGCATGGATTACTTCTTAACcaggatttaaaaaatactCCAAGTAAAAgactgtttttttgcttttagcaGTGTTATTGTATTGCTCCTTTTTATATGTGAAGCATATTCTTATGCTATATGTGTAATTTAACCAAAGCCTCTGTCACTAATTGCTTTTCCGATGTCTGTGATAGACAGTACTCTTATTTATGAAGTTGTCTTTTTTATGGCACTTAaaatgtttctctctgttttgcacattttctcaTATGTGGTCCAGACGTGTCTGTAAAATTGTTGGATTTCAGGCAAAATACTCTCATGTATGTGGAAAAAAGGTTAATTTACTTAAAGGTCTTTGGGGGGAAAAAGGGAAAATTGatgctgcttttattaaaatTGGTCAAAACAGTGCTTAATCTGAATGCACATTTCATTATACTAAATTTATTTTGATCAgtcagtgtgtatgtgtttttatacaGGCCACACAATGAGTCTGTACAGCAGGAATCTATGAGTCTTAAGTCATTCCATCAAACCATAGTAGAGCACTTCAGTCGGCTTATACATGACGTGATCATGGTAAAGTGGACTTCACATTACAatttccagcattttatttaaaatgatcacTTGATTGCTTGATGATCTAAATAATCCATGTTGACTATCtgctaaaaaaaaggatttaaaacaaaaatatcagTTGTGAATCACAAGAAACCACCACAACCCACCATAGCTCTCAATACAACAAACACAACCAGCTAACTTTACAGAGTTTTGTGTTCTACACTCTCTGGTCATTTGtacttgaaataattttttttttatctga

Function

GO: NA

KEGG:

id description
K23859 PLEKHG1_2_3; pleckstrin homology domain-containing family G member 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5689 lncRNA downstream 27051 16312358 ~ 16312670 (-) True G4197
TU5688 lncRNA downstream 49995 16288143 ~ 16289726 (-) True G4196
TU5677 lncRNA downstream 62982 16271630 ~ 16276739 (-) True G4192
TU5679 lncRNA downstream 65902 16271630 ~ 16273819 (-) False G4192
TU5617 lncRNA downstream 147191 16191690 ~ 16192530 (-) True G4147
TU5708 lncRNA upstream 67736 16480335 ~ 16480650 (-) True G4215
TU5756 lncRNA upstream 125132 16537731 ~ 16537940 (-) True G4245
TU5764 lncRNA upstream 148921 16561520 ~ 16562762 (-) True G4252
TU5765 lncRNA upstream 166883 16579482 ~ 16579867 (-) True G4253
TU5766 lncRNA upstream 184989 16597588 ~ 16597900 (-) True G4254
XM_007245987.3 mRNA downstream 29072 16291524 ~ 16310649 (-) False supt5h
XM_007245986.3 mRNA downstream 29072 16291524 ~ 16310649 (-) True supt5h
XM_007245981.3 mRNA downstream 57089 16278005 ~ 16282632 (-) True LOC103022652
XM_007245990.3 mRNA downstream 181060 16148608 ~ 16158661 (-) True LOC103025059
XM_022668837.1 mRNA downstream 196813 16076499 ~ 16142908 (-) False sgsm2
XM_007245976.3 mRNA upstream 27019 16439618 ~ 16451002 (-) True LOC103047885
XM_022668975.1 mRNA upstream 130349 16542948 ~ 16547740 (-) True LOC103030646
XM_007245961.3 mRNA upstream 206512 16619111 ~ 16622984 (-) True LOC103044128
XM_007245964.3 mRNA upstream 231893 16644492 ~ 16653967 (-) True ercc2
XM_015604963.2 mRNA upstream 243636 16656235 ~ 16658680 (-) True LOC103043199
TU5685 other downstream 57091 16278007 ~ 16282630 (-) False LOC103022652
trnae-uuc other downstream 1304635 15035015 ~ 15035086 (-) True trnae-uuc
TU4805 other downstream 2055496 14283623 ~ 14284225 (-) True G3612
XR_002648788.1 other downstream 2207185 14127369 ~ 14132536 (-) False LOC111189390
XR_002649862.1 other upstream 231953 16644552 ~ 16653968 (-) False ercc2
TU6059 other upstream 1571286 17983885 ~ 17998736 (-) True LOC103040336
TU6226 other upstream 1617763 18030362 ~ 18040766 (-) True G4621
trnap-agg other upstream 1988963 18401562 ~ 18401633 (-) True trnap-agg
TU6523 other upstream 3226779 19639378 ~ 19648802 (-) False LOC103038769

Expression Profile