RNA id: XM_007249907.3


Basic Information

Item Value
RNA id XM_007249907.3
length 1019
RNA type mRNA
GC content 0.45
exon number 5
gene id ebp
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24806913 ~ 24809335 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGGTGTGAATACCTGTTGGGCGGCGCGTGCAGCTCCATTGCACCACAGGTTGATTGCATTGCTGTCATTTATGACAGGGTAATTTTTCCAGTTCACCAGAAGCGTTCTGCACGTTTTAAGCCGGTCAAGACTCTCCTGTCCTACATTTCTACTGGTTGCACTTCAGAGACAACTTCGAACAAGAACTGCAGCTTTCCACCTTAGATTTCTGCTTATCATTCAAGATGccaaaagcagcagcagtggcaaaTCACCCCTTCTGGCCCAGAGACCTGTCCATTCCGAACTACATACCAAATGACCGTTCCATGATTGAGATTGTCACATTCCTGTTCTCTGTGTCCGGGCTGTTTGTCCTGGTGGCCTGGGCTCTGACAGGGCAGAAGGTTGCTGGAGGGAGGCTCAGCAGCTGGAGAAGGTTGGCTCTGTGctggtttacagtgtgtggctTTATCCATGGTGTTATTGAGGGCTGGTTTGCTCTCTACTATCCCATCATTCCAGGAGACCAGAGCTTCCTCTCCCAACTCTGGAAGGAATATTCAAAAGGTGACAGCAGATATGTGATagcggATAATTTCACTGTTTGCATGGAGACAGTGACCGCTTGTCTATGGGGACCTTTCAGTCTGTGGATCGTCGTGGCCTTTTTGTTCAATCGGCCTTACAGATTTATCTTGCAGCTAATTGTATCCCTAGGTCAGCTTTATGGAGCTGTGCTTTATTTCTACACCGAACACAGAGACGGCTACATCCACAGCGAGTATGGCCACCCCATCTATTTCTGGTTCTACTTTGTCTTCATGAATGTCCTGTGGATTGTAATCCCTTTCATTCTTATTTTGGACTCATGGTCTCAGCTATCTAACACTCAAGCCTTGTCtgacaaaacacagaaacacaaatcCAAATAGTTGAAAAATGAAATGGGAatgaatgtaatgtaaatgtactcCATTCTAGGTGATGCctgcaattttatatttttatgaataaacTGTCTAATTTACTATGAA

Function

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG:

id description
K01824 EBP; cholestenol Delta-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181935 lncRNA downstream 133124 24672405 ~ 24673789 (-) True G134500
TU181930 lncRNA downstream 150341 24654166 ~ 24656572 (-) True G134497
TU181931 lncRNA downstream 150341 24654166 ~ 24656572 (-) False G134497
TU181929 lncRNA downstream 152822 24653384 ~ 24654091 (-) True G134496
TU181923 lncRNA downstream 175056 24621875 ~ 24631857 (-) False LOC111194123
TU181960 lncRNA upstream 7836 24817171 ~ 24820589 (-) True G134516
TU181964 lncRNA upstream 19970 24829305 ~ 24829884 (-) True G134520
TU181982 lncRNA upstream 212897 25022232 ~ 25022463 (-) True G134535
TU182266 lncRNA upstream 381629 25190964 ~ 25191789 (-) True G134748
TU182288 lncRNA upstream 475108 25284443 ~ 25301492 (-) True LOC103026004
XM_007249922.3 mRNA downstream 12633 24751907 ~ 24794280 (-) True pard6b
XM_022677391.1 mRNA downstream 58801 24705747 ~ 24748112 (-) True arfgef2
XM_007249924.3 mRNA downstream 102961 24662615 ~ 24703952 (-) True bcl2l1
XM_007249914.3 mRNA upstream 22037 24831372 ~ 24836141 (-) False oard1
XM_007249917.3 mRNA upstream 22037 24831372 ~ 24836132 (-) False oard1
XM_007249913.3 mRNA upstream 22037 24831372 ~ 24836131 (-) True oard1
XM_007249918.2 mRNA upstream 32517 24841852 ~ 24846483 (-) True guca1b
XM_022677397.1 mRNA upstream 44866 24854201 ~ 25008250 (-) False klhdc8b
trnaf-gaa_3 other downstream 1270 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181775 other downstream 321185 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 373444 24431159 ~ 24433469 (-) True LOC111194023
TU181672 other downstream 533844 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 1175758 23624281 ~ 23631155 (-) True G134093
trnah-gug_15 other upstream 1096 24810431 ~ 24810502 (-) True trnah-gug_15
TU182421 other upstream 982552 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 995343 25804678 ~ 25805810 (-) False taf13
XR_002650929.1 other upstream 995348 25804683 ~ 25805806 (-) False taf13
TU182548 other upstream 1177856 25987191 ~ 26004934 (-) True G134931

Expression Profile