RNA id: TU181929


Basic Information

Item Value
RNA id TU181929
length 686
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G134496
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24653384 ~ 24654091 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacggatcttttcacgcactcgtggttgtaggttttgccaccacgacgccagacacgaggaccttggtcaccgaaggagatgcagaagcgtgattcgtcactgaagaccactttctgccagtcttcagcagtccactcgccgtgttctttggcccacttcagccgtttctccatttgtttcttgttcagcatcggttttactgctggaacgcgagatttgaagccgagttcgcgcaaacgacggtaagtggttgatctggagacgtcagcgccggtctgcttgttccacaagtcggtgagctcggaagtggacttgaaccggttgctgactgcgatctttctcagctgcttgttgtcgcgagcagaagtttttcgaacgccggaacagttggtgcgcttgctgcagtttttcttgagagctttgcagacggaagactggctgatgccgagctgctcagcaattttagtttgggtcaagccttgttggcgaagggcttgaatttgagccactattccggttgagaggtcgcgctgcttacccatgattgattttacaacttagaaattctactcaaccctgactttatactgcacagtgaacactcttcacagaaaacaaaaattcgagcatttattctacagttaaatggcctaaatgggccttttggaaagctcagctgagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181924 lncRNA downstream 21527 24621617 ~ 24631857 (-) False LOC111194123
TU181920 lncRNA downstream 21527 24621875 ~ 24631857 (-) False LOC111194123
TU181923 lncRNA downstream 21527 24621875 ~ 24631857 (-) False LOC111194123
TU181814 lncRNA downstream 110532 24542473 ~ 24542852 (-) True G134414
TU181813 lncRNA downstream 127812 24525079 ~ 24525572 (-) True G134413
TU181930 lncRNA upstream 75 24654166 ~ 24656572 (-) True G134497
TU181931 lncRNA upstream 75 24654166 ~ 24656572 (-) False G134497
TU181935 lncRNA upstream 18314 24672405 ~ 24673789 (-) True G134500
TU181960 lncRNA upstream 163080 24817171 ~ 24820589 (-) True G134516
TU181964 lncRNA upstream 175214 24829305 ~ 24829884 (-) True G134520
XM_022677385.1 mRNA downstream 23340 24621789 ~ 24630044 (-) True LOC111194123
XM_007249927.3 mRNA downstream 48038 24571423 ~ 24605346 (-) False fam110a
XM_022677384.1 mRNA downstream 48038 24571423 ~ 24605346 (-) False fam110a
XM_022677383.1 mRNA downstream 48038 24571423 ~ 24605346 (-) True fam110a
XM_007249928.3 mRNA downstream 142830 24504354 ~ 24510554 (-) True nsfl1c
XM_007249924.3 mRNA upstream 8524 24662615 ~ 24703952 (-) True bcl2l1
XM_007249925.3 mRNA upstream 8524 24662615 ~ 24702472 (-) False bcl2l1
XM_022677393.1 mRNA upstream 8524 24662615 ~ 24702445 (-) False bcl2l1
XM_022677392.1 mRNA upstream 8524 24662615 ~ 24701673 (-) False bcl2l1
XM_022677391.1 mRNA upstream 51656 24705747 ~ 24748112 (-) True arfgef2
TU181775 other downstream 167656 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 219915 24431159 ~ 24433469 (-) True LOC111194023
TU181672 other downstream 380315 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 1022229 23624281 ~ 23631155 (-) True G134093
XR_002650924.1 other downstream 1737000 22909821 ~ 22916384 (-) False LOC103034468
trnaf-gaa_3 other upstream 151480 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181951 other upstream 152843 24806934 ~ 24809215 (-) False ebp
trnah-gug_15 other upstream 156340 24810431 ~ 24810502 (-) True trnah-gug_15
TU182421 other upstream 1137796 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 1150587 25804678 ~ 25805810 (-) False taf13

Expression Profile