RNA id: XM_022677383.1


Basic Information

Item Value
RNA id XM_022677383.1
length 5266
RNA type mRNA
GC content 0.45
exon number 4
gene id fam110a
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24571423 ~ 24605346 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACGTCATTCCTCAGCGGTGGGATTTTAAAAAGCGAATCTCATAAACAGCTAGTGTcgtatatttatgatttattgaGTTATAAAGTTATTAGTTTATGTGTTAAGTCCTTTATAAACACTGCAAGGCTGTGCAGTTCCTACAGAGCTCACTGTGTTCTGTGGAACGTCTGGAATGCTGTGCTTTTTCTGTCCAGCTTCAGCTCTCAGCACAGGTGGAAGCTAAGAGCTGCGGGGCCACCAGTCTCAGCATGGACAGAATTACAGCCGTTTCCATAGAGATCTGTCACCACAACTAATGGTATCACTTCTATAGGATTGCTGCTCATTGTGTAGTTCAGGAAGTGTTGTTCTTCCTGCCTGTTCTGTAGTGAAGGGCGCAGCTGATTGGACGGGCTGGGTGGAGCCAGGCTGAGAGAGGAGGTGTATTTGAGTTGTTGGCTCACAGGCACACACAGACTCTCTCACACGCGCTGTGCCTCTTCAGGAGAGCACTACTTTCTCAACTGGCATCTGTTTTCAAAAGGACATCTACActtgttttaccttttttccaGTCAGTAGACTAAAACTCTTCACACCTCTATTGagcACAAAGAATATTTCAGGATTACAAACTTCAGCTTTGACGACTCCTTTTGCCGGTGTACGTAAAAGGAGCGGACCAGGTCACTGTGTTTACAGGATTTACCCCGTTACTTGGCTCGTTTCAGCACCGAGGATTGAACTGAGCCTTAGCCCTGGCTTCACGGGCTGCCCTTGTCCTGGTGGGTCACTCAGTCGGACTGATGTGGAATGCAACCTCTAGTGACCCCCTCCCAGAGGTCTCCATTCAGTGAGCAGCACCAGAAAGAGTGGGGATAAAAGACAAGAGGACCtgaaacaaaaaagagagaaggagcagcagcagcaggagcgtTCAGCCTGGTTGGAAAGTTAAAGGGGGCGAGGAGCTTAAAACCCCTGGTAAAAGAAAGAGTGGAAAGCGTGAGTATAAAAGACATTTTTGCTGCTTTTCTGGACATTTAAAAGCTCAAAGGGGGACTGacaagcctcagctccagctacACAGTTGCTGACATAAACAGCCATGCCGGTGGAGACCCTTCGTCCTTCTGATGGCCGTCTGGCTGGGGGTCCTTTTACTTCAGCCATGCCTTTCCGCATTCTGAACAAGGGCCCGGACTACTTCCGCAGGGCTCCTGAGCCTGGGGCTCGAAAGCTGAGTGCAGTGGAGCGCCTTGAGGCTGACAAGGCCAAGTATGTTAAGAGCCAGCAAGTAGCACTCACAAGGCAGGAGCCTGTGAAGCCACCAATTATTCGCAAGCCCCTACTCTCTCCAAGCATGATGCTGCAGTGCAAAATCAACACTCCACCAGCCCGCAAAGTCCCACGTAGACCTATGGACTTTGTGGATAATGGAGGAAGCCCTGGGCAGGGTGCCCGCAGGGGACCACAACTCAACCTGGAGATCCTAAACAACCTCATTAATGTCTCTGATGGGGTCCAGCCTTCATCTCCAGTCCCTTCCTCTCCCTCACCTATGGCCTCATCTCCCTCATCTGGAGGAAAGAGCATGGGGAGTGGACATTCTGCAACAGAGAATTCACAAAGTTTCAGCTTTAAAGGACACCTTCTGTCAACGGCTGATTCTGTCAACTCCTGCACTTCCTCTCCTCTTAACAACCACATTCAGCCTCCTTGTCCTGCTGTTCCAGAGCCCAGCCGCAGGCCTCCCCCTGTACCAGCCAGAGCTCCCCGGCTCCCTGCACAGGGCACCTCCTATGGGAGCCCAAATTCTGTGACAGTTCGGCGGGTGGACGTGCGGCCGCAAGCAGAGGTCAGAAAGCCTCAACGGATTCCCCTGAAGCCTCAACCCAAACCTAGACAGACTGTTCAGCCACAGATCGCCCAGCCACAGgtaccacctccaccacctccatctTCTAAGCCTCCCTCACTCCCGACCCGATCTCCCTCGCCCTGCCTGCCCTCCAGCCCCTTACTCATGCGATCAGGTGTCCCACCTCCAGCCTCGCCTGCCTTTACCCGCCTTTCTTCGGCCAGTTCGCGAGGCTCGGGGCGCAAGCATCCAACTCTGCATCGTTCCAAATCGGACCTAAGCGACCGGCTCTCGCGGGCCACTGCTGACCTGGAGCGCTTCTTTAACTACTGCGGGCTGGACCCTGAGGAGATGGAGGACTTGGGTGGAGTGGAGCGCTTTGCCCGCGCCGCCTCCGACATTGTCTCCGTCTCAAAGCTCCGTAGCGTCAGCACGCCTAGCTCAGAGTGTGGAGATGAGGGCAGGGGGGAAGCGGAGGAAGATGACTATGACGATGCCCCCCCTAGGCCCAGCGAGCGTGTTCCCTATGGCATCTCGGTCATCGAAAGGAACGCACGCGTCATCAAGTGGCTTTATGGAATACGACAGGCACGGGACACGCAAAGTGTATCCAATGTGTAGGTGTTCCCCCTTTGGTGTTCCCTGGAACTCCAAATAGAAGGAAAATAAAGGGGAAAGAGACCTTAATGAATGAACTCGTGATGAACGTGAACATGCCCTTTGTTGATGAATCTTTTGTTTAtacatatgatatatttatgtttttgagACTCTAAGTGATGCTGAtttttgtactgtatatttgtgttcCATATGGAGTATTCTAGTTTTGCCTTACGATAAGTTCAAGGACTTTTGTTCTTATACATCTCATTCGTGTTTAATTGGTGCAAATATTTTGTTGTACATGGCCCgttttttaggttttttacttttcttgGGCTGTAATGACAATTTACCTCAAAAAGCGAGAAGGAGGGCGTGAACTGGAGCAAGCTTTAGAACTTCTGCACATTGACTTGGATATAAAAGTCGTTTAAagcaataattaaaatataaatgctaATAACTGTGAGAGACTGAGTggatgatgatagtgatgatgatgatgatgatgatgatgatgttgatgatgatgatgttgaagAAGCAGACAGCAGTAGACCTGCTGCAATGGTGCTGTTCAGGTACTTAGTCTTTATTTCAAATAGCAGAGATACGGGAACTGTGGCTTTCTAATAGTTGTAAGGGCTCTGTAATGATAACCAGCCAGGTACTGTTTAGCAGTAGAATCCTCGTGTGTTTGTACAGCGTGAATCAGGTAATGGCGTAACTTCCAGGTGAATAAGTGCAGATAAGAAAAGATCCGAAAGTCCACAGTCCCCCAGTTGCCGGTAGCAGGAGGGTCTCAGGGACCTGTGCTTAGTCAGCTGCAACTGGGATTATAGTATAAAGACACAGCCAGCACACAGGAAGGCTATGTTGAAGATACGTTCACTGTCgcacactagggctgcacaatataaaaAGAGCATCATAGTGCAACAATACTGTTTATACTTCATTGTAATATGCCTTGAAATGTGTTAGAAACACAAAGCCTTGATCTGATTCTTTACATTAGTTGGATGccttattttattcaaaaacaGTTCAGTACAATATTGTTCATGGTCATAATTCCAAAAAAAGCTGAtcgctgttgtttttgtgtagTCCTACAATAAATATTATGTAGGATAATCAAGgtgatttattgtaatattgtttgttcaaatcaaattttagtAAAATTGTCATAGTATTGAACAACATAATCATATTTTGAAAATCTGAGTAAtagaatattttacttttattaatgcAGTCACAACAGCAGGATCTAATAATGGAGTACAACACTGCCAACAAGtagttgtgtttaaaaaaaacactactcaaAATTAACCACTATCTGACACCAAGCTTTGGTGTAAACTAATAACTATACATCaatactatattaaaaaaataataataaagtatgccaAAACAAAATATCGCTATACTTCGGTATATCaatgtttgttttcttaccCAACTaatacagaattttttttttgttgcataacAAAATGACAGTGATTTTagatattgtgcagccctaatgtaaCCACATACGTGTGCACATGCATGCACTCAGTATAACACtcctgtgcacacacacacacacagcttaccCCTGCTcactgtgcacacacacacacacacatctttaaGCTGTCAGTGTCGAGTGTAAGAAGGAATGAACATGCAAAGGACAAAGGACAACGAGGTTCTGTTGATCGAGGGTCTGTGACGCTCTAAACTATGAGGCGTGAAACTCTATACTATATGATACTGTGAAGGAACTCCTGAGCTTCCTTATATTCACTTTATACACTTCCTCTCTTTATCAGTGGCTGTTTGGACAGTTCATATTGATTCATATTGATGTCAGCATGTGACTTCCGCTTCCGttagcatgcacacacacttgtgtacaggtgaatttttttttgcctcaatATAACGTGGAAAGCCATTTCAGCAAAAGCAATTTGCAAAAGCACAGTTGCACCCGCAGCCACACGTTCGTTCCAGCACTCTTGAACATTTGTATGTTCAGCATCTAATTTAGGAATGAAGTTCTGTGggattctgttcttttttttcgttgttgtttttgtattcAGCAGGGGAATTTGGGTAGGATTGGGTTTGTGCAGCAAAGTGTTTTCCTCTCTCTGTGAGGAGTTATATAATTGTGAAGAGTGAAGAAGGTTGCGTCATGTGTGGGATGGACGCAGGAGGTAGGGATGTGGAAGAACCCGAGAGAGAGCGCAGGAGTCAGGTTGGGACAGAAACTCTCAGGTTTGCGTTCTGTGTAGGGGGTGGGGATACGCAGTCACATCTCTTTACtgcagagatggatggatggatgaatgaatggatggatggatgaagtcATGAGGGAGAAATGTTGCTTTAAAGAAAGCTGGAATTGAAAGGATGTTGAATAGATGTTACCATGGGACACAGTTTGTTTGTGGTCAGAGAAGAAAGACACAATGCTGTTTTCCAACCTGCTTTTTCTTTAGTTCAGGTCAGCAATCACTGAACttagtttaatgttaaatgtgcTTCCAAACCGTTTTAACCTGCATACCTTCAATAGGACAACTCAAACATTTCAGAGCTACAGAGACACAAATGCACGCTAACGTCAACAATGTAGAAATCACATGAAGAAGAATATGCTCAGCCGTATTCAATGGACAATGAAGTATGACTTGGGTTCTGTGGTAAGTTTTGTTAAGAGCTTGACGCTCAGCACATCAAAAGCAAGGAATATCTGAtgcaaaatgtcttttaaagaTGTCAATAAAGAAAGATTTTTGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181814 lncRNA downstream 28571 24542473 ~ 24542852 (-) True G134414
TU181813 lncRNA downstream 45851 24525079 ~ 24525572 (-) True G134413
XR_002650843.1 lncRNA downstream 137952 24431332 ~ 24433471 (-) False LOC111194023
TU181771 lncRNA downstream 199944 24370379 ~ 24371479 (-) True G134379
TU181770 lncRNA downstream 208590 24362143 ~ 24362833 (-) True G134378
TU181924 lncRNA upstream 16271 24621617 ~ 24631857 (-) False LOC111194123
TU181920 lncRNA upstream 16529 24621875 ~ 24631857 (-) False LOC111194123
TU181923 lncRNA upstream 16529 24621875 ~ 24631857 (-) False LOC111194123
TU181929 lncRNA upstream 48038 24653384 ~ 24654091 (-) True G134496
TU181930 lncRNA upstream 48820 24654166 ~ 24656572 (-) True G134497
XM_007249928.3 mRNA downstream 60869 24504354 ~ 24510554 (-) True nsfl1c
XM_015605970.2 mRNA downstream 76998 24483965 ~ 24494425 (-) False trpc4ap
XM_007249929.3 mRNA downstream 76998 24483965 ~ 24494425 (-) True trpc4ap
XM_007249934.3 mRNA downstream 146039 24419642 ~ 24425384 (-) True LOC103041050
XM_007249939.3 mRNA downstream 170971 24359390 ~ 24400452 (-) True LOC103041866
XM_022677385.1 mRNA upstream 16443 24621789 ~ 24630044 (-) True LOC111194123
XM_007249924.3 mRNA upstream 57269 24662615 ~ 24703952 (-) True bcl2l1
XM_007249925.3 mRNA upstream 57269 24662615 ~ 24702472 (-) False bcl2l1
XM_022677393.1 mRNA upstream 57269 24662615 ~ 24702445 (-) False bcl2l1
XM_022677392.1 mRNA upstream 57269 24662615 ~ 24701673 (-) False bcl2l1
TU181775 other downstream 85695 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 137954 24431159 ~ 24433469 (-) True LOC111194023
TU181672 other downstream 298354 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 940268 23624281 ~ 23631155 (-) True G134093
XR_002650924.1 other downstream 1655039 22909821 ~ 22916384 (-) False LOC103034468
trnaf-gaa_3 other upstream 200225 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181951 other upstream 201588 24806934 ~ 24809215 (-) False ebp
trnah-gug_15 other upstream 205085 24810431 ~ 24810502 (-) True trnah-gug_15
TU182421 other upstream 1186541 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 1199332 25804678 ~ 25805810 (-) False taf13

Expression Profile