RNA id: XM_022677385.1


Basic Information

Item Value
RNA id XM_022677385.1
length 8256
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC111194123
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24621617 ~ 24631857 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgcCCCTCACTAGATAAGTTTAATTCTCTATTTTGTGTATAATTCTGAGTTAAGTCAGCAGAAAGTGTTAATTCTCTGAGTGAAATTGATAAAGTTAAGTCTTAGCCTAATTTCATTACAGTGTACTTTCAAGAAAGCTACATTCCAGTTTTAAGGGGTGTTTATGAGCTGAAATAAGCTGCAATATTTCGTACAGTGAGAAGGTCAGAGCTctggtttttatttaatttgtcacCAACTTATTTCTTTACTGAAGACaattttatttaaggtttaagcactttattttgtgtattttgtgtttgtttttctaaaattgtGAGTTGTggggtttatttaaatataatattgtattttatatattttataataatatataaatcctaaaacataacattgagataataagaaataataagaaatatacATCTATAAAGCTAATTCATAAAACCCTAAAAGTTGTGTCTGGTTTAATTCATTTATCTTAAACtattcattaataatacaaGTTGGATATttgattttgtgtttaaaatctGAACACTAATTCTTAACATCGAACCCTAGCCTCACCCGCTATAGATATATAGAGAAGTATCACCAGATAGTGGGCACGAGTGCTACATAAAATGGAGGCACCGCTGGGATGGTTAAAATAAGTTTGTAGTATAAGATCTTAAAATCCCAAAGAACTAAGTTATTAAAAAGGAATTACTGTAAGGTgatattgtaaaatagtgaTATAAAATAGTTTAGTAAAACCAGACACACTAGTTTCATTTAAGCTTTAAAGTTTCTTCTAATACAGTCCATAAACAGTATTTGAAATATTTCATTTGAGTTCTGAACCTTTATCGCAGCTAGtcagatttaaaataatttaaaaacaatctgAATATTTACAGTCTGACAAAGTTAGTCACAACCCAGAGCATGGCACAACTTCACCATTGGTGTAAAGGGGAAGGCATCAACCCTGAAAATGCCTTGTTGGTGAAAGACATTCCTGACGACACCGAAGTCAGCTTCATTGAAGAAACCCTCGAGTCTGTAAAAACACTTGGACGAGTCAGAGTGCGAGGCAGGATGTATGATCCCCAGCTTGAGAGTTTAACAGTCCTGTGTGAATGTCGTGAAAAAGTGAATGTCAAGAGACTACCACTAGATGTGCTGCCTTCTGGCACTGATAGGCCTTGGAGATTGGTTGGAGCCTCAGCAGAGGGCACAACTGAGCGAGACAAACCAGATAGGAACCCTGTTTTGAGCCAAGCAGAACTAACGCAGACATGTACACCTGATGCCATCATTCGAGCAGTTGGAGAATTGATGGACAAGCAAGGCAGATTCTCAGGTGAGAGCAGTGCATATAGGAGATTACGTACGTTCTCTGGAGTCATGCCTACTCCACTTGGTGAAGAGCAGCTAGACAGCTGGTTAGAGCAAGCCCGTCTTATGGTTGACACCTGTGAAAGACCAGATAAAGAGAAACGAATGCGAATTTTGGAGAGTCTGAAAGGTCCAGCATCTGAAATTGCGCAGGCTGTTCGATTCAACGACTCAGATGCatcctctcaagagtacattgATGCTATTGAGAATGCTTTTGGCACCCCAGAGACTGGGGAGGAGCTTTACTTTGCATTCAGGCACCTTTGCCAGAAACCAGGGGAAAAACTTTCTGAATTTCTAAGACGTATTGAGAAAGCTCTGAACAAAGTTGTACAGAGAAGTGGTCTCCCAGCCTCTGCTGCTAATGGAGCACGTCTAGAACAACTCATTAAAGGTGCAACTGCATCTGACCTGATGCTTTTGAATCTGAGACTAAGAGAAAGGAGGAACAGTCCACCTAATTTCTTACAGCTGTTGAATGAAATCCGCTTAGAAGAAGGATATGAAGCTTCACGAAACAAGCTGAGTTCAACAATGACATCTGTCCAAGTGAAGAGTGCGAGGGCACATTCAAATGAGATGCAAGGTCTTCAAGATGAGATAAGAGAATTGAGACAACAAGTTAGTGACTACACTTCTCTGCAGCCAGTACAAACCTTAGCTGCTGAAGTGCATTTGCCCCCTAGTTTTAAGACTGAATCCTCAGGGGATGACAAGAAAGTGAATGCTTTGAAAAAAGAAGTGAAGAAGCTGCGTAAACAGGTCAAAGTAATGGCTGTCAAGCCAGCCACTGAGAGGTCTGCTCACAAGCTGCCATCTTCCAATTTCAACCAGTCAAGCTCATTGTCAACCCGAAGCCACAGTGACTTTTTCTGCTATCGTTGTGGTGATGATGGACATGTATCAGCCAAGTGTCAAGCTCCAGAAGACCCTCAGAAGGTGATTCAGAAATTCATTCATGCACGGCATGCCGCAAAGGATGGAAAGAGAGAATCAACAGTTCGTTCTGAGGAAGACTCCTCCAAGATCCATGTAAACCGAGGGGTTGTAAGGGGAAAGTCAAACTGTATACCCAGAGGGTTAGTAGGACCTCCATCTTTGGTCCAAGTGAAAGTTGCTGGAAAGCCGTGTACTGCTCTCATCGATAGTGGCTCACAAGTGACAATTGTCTTTGAAAGCTGGTATTCACAGCATCTAGCTCACAAGCCTCTTCATCCGTTGAGTGGTCTGTTCATCTGGGGTCTGAGTGGCTCTGATGATAGTTATCCATACCGTGGCTACATCCAAGTTGACTTAGAACTTCCAAAGAACATGTCCAGCATTAAAGGGCCCATCACTGTTCTTGCTCTAGTGTGCCCTGATCCTCGTTGTTCTGATAGTGTGCCAATTCTACTGGGCACCAATGTTCACACAATTCGTCCTTTCAACTCTGTCAACAAAAAGTCCAATTCCGACCAAGTGTGCTCTATGAGAGTATGTGCTGTTGCTCCATCTACAGTGCAACCCAGCCCAAGTACAagagctgctgcttctgctgggGACAGAGTGGCTGATGTTAGATGGCCTGGGCCTGGTCCTCTAGTTGTTCCTGCCACAAGTGACCACATTGCAATTtgtaaagtcaaagaaactcagtCACTGGAGAAGAGTATCCTCATCACAGAGCGTGCTTCATCGTTTGCTCTGCCCACAAGTGTGTTAGTACAGCCCACAGTGTTGTTCTCATCCACACTGGACAAGAACAAATTCTTAGTCATGCTGAGGAATGAGTCTCTTAAAGATGTTTCCATTCCGTCTGGTACTATCCTCGCTCACCTTCAGGCAGTAGACACTGTAACAGTAGCACAGCCAGACAAGTCAAAGGTTCGTCAACAAATAGACCCTGTGGTATTTGATTTTGCCAACTCACCGATTCCAGAAGAGTGGAAAGAGAGACTTTCTAAGAAACTAGCACAAAGAGTAAACGTCTTCTCATTGGAGGAATGGGATGTTGGTCTGGCGAGAGGGGTGGAGCATAGAATTAGACTGCGTGATGATAAGCCATTCCGGGAGAGGTCCCGCCGTATAGCGCCTGCTGACCTAGATGATCTGCGTCGACACTTGCAAGGCCTGTTAGCTGCAGGAATCATAAAGGAGTCAAGGAGCCCTTATGCATCTCCCATCGTCCTGGCAAGAAAGAAGTCTGGCCAGTTACGCATGTGTGTGGACTACAGGACTTTGAATCGACACACCATTCCTGATCAGTATGTCGTACCACGTATTGATGAAGCACTGGATTGTTTAAGTGGTAGTAAGTGGTTCTCTGTTCTGGATTTACGTAGTGGATACTATCAGATCCCTATGGCAGATGAAGACAAAGAGAAGACTGCTTTCATATGCCCACTCGGATTCTTTCAGTTCCAGAGAATGCCGCAAGGGGTCACTGGGGCCCCAGCGACCTTTCAACGTCTCATGGAGAGGGCAGTAGGTGACATGCACATGCTGGAAGTGATAGTATACCTCGATGACCTGATCGTGTTCGGGAAAAGCTTGGCAGAGCATGAAGAACGCTTACTGAAAGTCCTTGACAGATTGGAGGAGAGTGGGCTGAAGTTGTCCATCGATAAGTGTCAGTTCTGTCGTTCCCAAGTGACATATGTGGGACACATTGTGTCGGAGCAGGGCATTGCAACAGATCCTGCTAAGATTGAGGCAGTGGCTGCCTGGAAGCAACCCACTGATCTTGCTTCTCTTCAGTCATTCTTGGGGTTCTGTGGGTATTATCGACGTTTCATTAAAAGCTATTCCATCATCGTCCGACCTCTCACAGAGTTGACCAAGGGATACCCACCCACACAGAAGGGCAGAAAGTCATCCAAGACTGCAGGTGACAAAACCTACTTCAAGATCAAAGAACCTTTTGGTGACCGGTGGGATGAGTCATGCACCCAAGCGTTCAACCAGATAATTCACTGCCTCACTCATGCACCTGTTCTTGCTTTCGCCGACCCAGCCAAGCCCTATGTTCTCCATATAGATGCCAGTCTGCATGGTTTAGGTGCTGTTCTTAACCAAGAGTACCCAGAGGGGCTCAGGCCAGTTGCTTTTGCAAGCAGAAAGCTCAGTTCGTCAGAGAAGAACTACCCCGTCCACCAGCTTGAATTCCTAGCATTAAAATGGGCGGTGGTTGACAAGTTTCATGATTATCTGTATGGGGCAAGCTTCACCGTTAGAACTGATAACAACCCCCTAACATACGTTCTCACCACTGCAAAGTTAAATGCGACTGGTCATCGCTGGCTTGCTGCACTCTCAGCATATAATTTCACAGTCCAGTACAGGCCAGGGTGTCACAATATTGATGCAGACTCTCTGTCCAGAAACGTGTTCTCCAAGGAGAGTGGGGAATGGCGAGACATGTCCTCTGACAGCATTAAAGCTCTCTGCAAGCAAGTGCGCTGTGCACAGGATGGAATTTCCCCCAACTGTGCTGTGTTTCTGGGAATCGCTCCTGCTGCCATCCCAGACTGCTATGCATTCCCAACTCATTTGAACACTGGTTGTTTAGAGCTGCAAAGTTCAACTCACCTTAAAAACGCCCAAGACTCAGATCCCATAATTGCACCGATCAAGAAATCCCTCATTGAGGGGAGCTTGCAAATGGGTGACAAGGGAGAGTCACGTGAGACTGCGTTGCTGAGAAGAGAAGGACCACGGTTGAGAATAATTGATGGATTACTCTACAGAGTTGTGAAGAGGACACTAGGCACAGACGTGAGACAGCTCGTCTTACCCAAGGTCTACTTTCCCATGGTGTTGAGATCCCTCCATGATGAGTGTGGCCATTTAGGTGTAGAGAAGACAGCTGAGCTGATAAGAAACCGGTTCTATTGGCCGAAGATGAGCGCTGACATCGAGCAGTATGTCAAGAACTGTGGGCGATGCATTGCCCGGAAAACCTTACCTCAGAGAGCAGCTCCTCTGAATAAGATCCCGAGCCAAGGCCCATTAGACCTAGTGTGCATCGATTTCTTATCACTCGAGCCAGATACTCAGGGATTTGGCAGTATACTTGTGGTGACTGATAGTTTCACCCGTTACGCACAGGCCTTCCCGACAAAAGACCAAAAAGCTCCCACTGTTGCCAAAGTTCTGTTCGAGAAGTACTTTGTTCATTATGGTCTTCCGGCTCGGATACACTCAGACCAAGGGCGTGATTTCGAGTCCAAGTTGATCCATGAGCTTCTGAGAATGTTGGGCATCCGAAAATCTCGCACTACACCTTATCACCCCCAGGGAGACCCTCAACCAGAGAGGTTCAACAGAACCTTGCTCTCCATGTTAGGCACTCTAGATCCAAGACAGAAGCAAAGGTGGAGCCAGAAGATCAGTCAGTTAGTGCATGCTTACAACTGCACACGTAACGATGCCACTGGCTACTCCCCTTACCTGCTCATGTTTGGCAGAGAGGCTCGTCTCCCTGTGGATCTTTGTTTCGGGGTTGGTCCTGAAGGTGAAGATAACATTTCTTACCAGAACTATGTTGCGAGGCTGAGATCGGAACTTCATGATGCGTACAAGCTGGCCACGGATGCAGCTGTGAAGAACCATGAACGGAACAAGAAATTCTACGACAGATTGGTAAAGGAGCAGGTCTTGGCGAAAGGAGACCGTGTGTTACTCAGAAACTTTGGTGTCACAGGCAAGCACAAGCTACAGAACAAGTGGAGAATCATGCCATATGTCATTGTTGGAAAGATGGAAAATCTGCCTGTCTACAGAGTCAAGCCAGAAAGTGGTGGTGGAGAGGTGAAAACAGTTCATCGAAATCATCTGCTGCCTATTGGATGTCTGGTAAGAATGCCGGTGGATGAAGACGCACAAAGTCTGCCTAAAAGACCTGTGACAAGAAGAcagcagagacaaagagagagccAGACAGTTTCTGGTGGTGAGCTTCAAGATAGAGAGGTCGTACTAAGCGCTGATGAATCAGAGGATTCTGAAATTGTAACTTTCTATCCTGTGGCCTTTGACAGTGAACAGATATTGCATGACTTACTGCAGTGTCCTGATCTGCGTGCTAGAGTTCAAGAATCAAGTGCCACTGATGGTCACAAGATATCTTCAGCAAACTGCACTGAAAGAGCTGTTGAGACAAGAGATGATACTGATCATACTCCTGAAGTTGTGGATGCTGAGACAAATCCAACTTTGGATCCTTTTCCAGAGACTGATCTAGCAGGAGGAGTCGAAGCTGAGAGTGTACAGGAGAGTGTCGAAGCGGACATGCCAAGCACAAGGCCAAGTAGAGAAAAGAGACCAGTACAAAGACTTACCTATGATGAGCTTGGGGAACCATCAAGTTATCCCCTCAACACTCTGAGCATGGGTGTGTTGGTAGGATATGGCACCTATGTAGATGCCAAGAACTGCTCAAGCCAAACTATATGGTGTCACCCTATGGCTTTGTGTTCTGGTTGTGCAaagaaaaccaaacaaaaactaTAGCTAGCTTATGTAAGCTTAACAGTAGCTCACCCTCATGTTTGATGAGGACATCAAAATTCTAGAAGGGGGAGAGTGTAGCCCTGGGCAAAAATATACCCTTTaatgtttttactgtgtaaatcaGTTCTATTAGacactgtcactttaagaaTCAGTAAGTTAGTTAGACTGCAACTTGTTCCTAATGTTTTGGAGAGCAGTCAGAGTTAACTATTGGATAAATACTGTGTCTGTCAAGAttcctctgttctgattggtggGGGAGGGACTTGAGGGAGCAGGAGGGGAGTGTGCGGGAGAGAGATGCGAGAGAGCGCGGGAGACGAGGGAGAGGAGAGGGAACTAGTAGGAGAAGTACACGAAAGTGGAGCAAAAAGTTATATTTTGAGTGTAACAaccctttatttcagtaataagGGTGAGACCAAGATATATTATCTCGGTTAAGCAGTGTTACGTGAGTTATAATTGTGTTTTGCACCGTGTTTAAGGACTGAAGCACTGTAGTTAGCTACTCgagtaagctaactggctaattATGCTAGTTCAGTGTGACGGAGCTAGCTAGCGCTCAGGACTGATTCACTCTGCGTGGTTCGGGCGGGAAGAAGACGCCGTAGCCAAGGTCAGATAGACCCCCTGTGACCAGGTAAAGCAGTGTGGGTCCTCTGACGAAGATTTCTGCCTCCACCGTGCCTCTGATCCGCCTGGTTCTCCGTTCCTGTTCTCTTAAAGACTCCGAAAAGTAAGCTAAACATCTCCCAAGTTGCTGAAGGGGCTAGCCGAGTAGCCACGCCGCACCCAAGCATCATACAGGCCTGCAACATTTGTTattttggagtgtgtgtgtgtgtgtgtgtgtgtgtggggcgcCCCTCACTAGATAAGTTTAATTCTCTATTTTGTGTATAATTCTGAGTTAAGTCAGCAGAAAGTGTTAATTCTCTGAGTGAAATTGATAAAGTTAAGTCTTAGCCTAATTTCATTACAGTGTACTTTCAAGAAAGCTACATTCCAGTTTTAAGGGGTGTTTATGAGCTGAAATAAGCTGCAATATTTCGTACAGTGAGAAGGTCAGAGCTctggtttttatttaatttgtcacCACCTTATTTCTTTACTGAAGACaattttatttaaggtttaagcactttattttgtgtattttgtgtttgtttttctaaaattgtGAGTTGTggggtttatttaaatataatattgtattttatatattttataataatatataaatcctaaaacataacattgagataataagaaataataagaaatatacATCTATAAAGCTAATTCATAAAACCCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181814 lncRNA downstream 78937 24542473 ~ 24542852 (-) True G134414
TU181813 lncRNA downstream 96217 24525079 ~ 24525572 (-) True G134413
XR_002650843.1 lncRNA downstream 188318 24431332 ~ 24433471 (-) False LOC111194023
TU181771 lncRNA downstream 250310 24370379 ~ 24371479 (-) True G134379
TU181770 lncRNA downstream 258956 24362143 ~ 24362833 (-) True G134378
TU181929 lncRNA upstream 23340 24653384 ~ 24654091 (-) True G134496
TU181930 lncRNA upstream 24122 24654166 ~ 24656572 (-) True G134497
TU181931 lncRNA upstream 24122 24654166 ~ 24656572 (-) False G134497
TU181935 lncRNA upstream 42361 24672405 ~ 24673789 (-) True G134500
TU181960 lncRNA upstream 187127 24817171 ~ 24820589 (-) True G134516
XM_007249927.3 mRNA downstream 16443 24571423 ~ 24605346 (-) False fam110a
XM_022677384.1 mRNA downstream 16443 24571423 ~ 24605346 (-) False fam110a
XM_022677383.1 mRNA downstream 16443 24571423 ~ 24605346 (-) True fam110a
XM_007249928.3 mRNA downstream 111235 24504354 ~ 24510554 (-) True nsfl1c
XM_015605970.2 mRNA downstream 127364 24483965 ~ 24494425 (-) False trpc4ap
XM_007249924.3 mRNA upstream 32571 24662615 ~ 24703952 (-) True bcl2l1
XM_007249925.3 mRNA upstream 32571 24662615 ~ 24702472 (-) False bcl2l1
XM_022677393.1 mRNA upstream 32571 24662615 ~ 24702445 (-) False bcl2l1
XM_022677392.1 mRNA upstream 32571 24662615 ~ 24701673 (-) False bcl2l1
XM_022677391.1 mRNA upstream 75703 24705747 ~ 24748112 (-) True arfgef2
TU181775 other downstream 136061 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 188320 24431159 ~ 24433469 (-) True LOC111194023
TU181672 other downstream 348720 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 990634 23624281 ~ 23631155 (-) True G134093
XR_002650924.1 other downstream 1705405 22909821 ~ 22916384 (-) False LOC103034468
trnaf-gaa_3 other upstream 175527 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181951 other upstream 176890 24806934 ~ 24809215 (-) False ebp
trnah-gug_15 other upstream 180387 24810431 ~ 24810502 (-) True trnah-gug_15
TU182421 other upstream 1161843 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 1174634 25804678 ~ 25805810 (-) False taf13

Expression Profile