RNA id: TU213519


Basic Information

Item Value
RNA id TU213519
length 655
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G157483
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10506917 ~ 10534978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtgtGCCACCCCCTAGTCCTACAAGCAATATTACATTTTCATACAAAATTAAATgggggagagaaaaacaaaacaaacaaacaaaaacagcagagctgctggagtttttaaaccttGTGTTCAATGTTGTAGACTTAATGTCCTTAATCTGTTGCCGCACAGTTTGTGTGGTTTATCCTCTAGTCTTTAATCAGTGGTTAAATTGTGCAACAGTTGTACCATGACCTTCCAGCCACCCCCAGTCCCACAAGCAAATCTCACATTTTTATacaacattaaaaattaaaaaaacacaacaaaacacaaacaacaagaaaaacaaagacagaTTGCACAGTGACACGATGATGACATCAAAGAAAACCATCCCACGGGGTCTGCTCCGCCACTCTGGTCCAGAACAGAGTCAGCCCAGAATCCCCAGAAGGGCCCCCTCCCACCTCCGGGAGTCCCCCAGGGCTCAGTCTTAAGGCCACTGCACGTACACGTTGGCGAGAGAAGAGGGGCTTcaaagtatccatccatccatctgtctgtccgtccatcCAGTTCTCGTTtactcccttttttttttcctcctcttccCTCTATCCCCACACCCATCTCTCCGCCTGCGAGGATTTCAGCTGGACGGCCTCGGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213456 lncRNA upstream 285948 10220666 ~ 10220969 (+) True G157437
TU213382 lncRNA upstream 452942 10048811 ~ 10053975 (+) True G157388
TU213381 lncRNA upstream 479011 10027519 ~ 10027906 (+) True G157387
TU213314 lncRNA upstream 916345 9585206 ~ 9590572 (+) True G157334
TU213288 lncRNA upstream 999784 9504074 ~ 9507133 (+) True G157312
TU213516 lncRNA downstream 52778 10587756 ~ 10590979 (+) False gan
TU213556 lncRNA downstream 124815 10659793 ~ 10660427 (+) True G157513
TU213566 lncRNA downstream 165179 10700157 ~ 10700372 (+) True G157523
TU213553 lncRNA downstream 165810 10700788 ~ 10713973 (+) False klhl36
TU213586 lncRNA downstream 216751 10751729 ~ 10754383 (+) False LOC103038570
XM_007250938.3 mRNA upstream 1207502 9294573 ~ 9299415 (+) True lrrc4
XM_022679575.1 mRNA upstream 1390841 9113979 ~ 9116076 (+) True LOC111194762
XM_022679576.1 mRNA upstream 1390841 9113979 ~ 9116076 (+) False LOC111194762
XM_022679974.1 mRNA upstream 1392863 9110094 ~ 9114054 (+) True LOC111194832
XM_007250936.3 mRNA upstream 1586939 8904735 ~ 8919978 (+) True rbm28
XM_007250944.2 mRNA downstream 37765 10572743 ~ 10591523 (+) True gan
XM_007250948.3 mRNA downstream 60424 10595402 ~ 10628479 (+) True cmip
XM_007250951.3 mRNA downstream 174390 10709368 ~ 10713982 (+) True klhl36
XM_007250954.3 mRNA downstream 216721 10751699 ~ 10754698 (+) True LOC103038570
XM_007250958.3 mRNA downstream 223262 10758240 ~ 10764110 (+) True tmem5
TU213377 other upstream 565112 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 1936040 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 2900249 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 3075349 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 1827473 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 2200654 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 3198967 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 4515244 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 4593390 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile