RNA id: TU254229


Basic Information

Item Value
RNA id TU254229
length 1934
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id G187487
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5701793 ~ 5763491 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAAGGTATAAgtttaataaattttaaaagaatGCATATACAGTACAAAGGAGAGACTTCATACATAGCATTTGGTTTTTacaccaaaacaaaaaacagacaaacaaataagGGTGATAATGACTGGAAAGCAGAGCAACCTTGATCCACCTGTGTGACACCGATAGTAAACTTGGTTCTGTCAATGAGTAGTTCAGGGACGTTTTGCActgagttatgttttttttttttgcgaaagAAAAAGGTGTTCTATAAATCACAGGCGGACCAGTGTTGTTGGGATCCGGCCCCTAAATAAAGACAAAAGTGACGaacaaaaaagccaaaaaaaaaaaaaaaacaaaaaaaaaaaagaaatacaaattaagtcacaataaaaaacaaagaaaaaagaaaatgttttggtAAAAACAAGTGGAGTCTACATCAACTTTTGTCAgcttacattattattaaagttaacCTATCCAAAAGAAAACCAGAGGCTTACCTACATGCATTACGAGAAGTTTCTGAGAAATGCTTCTGTGGTCCCTGGTAACGCATTAGGACACGCCACTTGTTCTGCTAACACTGTTACAAAGTTCCCTGCTTGAGACAACCAATTCTTGCAGCCATTCAATACCCATTTAAACCACTCTTATTTACATGATTACTGACTCAACCGTCTATATCACGAAGGGGGGATAttggcaaagaaaaaaaaaaaaggagctaATTGTTTCCAAGCACTTCTGGTGATGTCCTAGGGTGAAGCAGGGGGTTAGGGCCCACTCCAGCTGGAGAGGGCGGACTCACAACGCTAGAAGCATGATTTGCAAGTTTGTAACTTGGTCTAGTAACCACTCAAACTCCTCAAAAGAGCAGGcagctgtttaaaaaacatggttaaatgaCCAATTCTCAAACCAAGGCAGCATATCTCTACAACTCACCATGAAGTACAGATTTAGAACATCTTAAAATCTAAACTAGAAAAAAAGGCCCTCTAGAGTCTTTAGATTAATAGCTGTGCTGATAGGGAACTCAAATTTATAATCTGACTCCTGTTGTGTGACTGAGtgatgtgcgcatgtgtgtgtatgtatatgtatgtgtatgtatgtgtaggGTAgtctttatatatctttattgCAGAGCAAAAATTTTAACTCACTTCTTTCATACATTGCTTTTAGAGTACAAAGCTGTTGGCCAGCCTTAGCAGAgcaaggaggagagagagagagagggagagagaaaggaacgGGTGCTCATAGCAGCACACATTTACGCTTCTTCTTGGGCTCAGGGGGTTCCAGGGCTGCCAAAATCGCCTCGTCAAATACATTCTTTAGGCCTTTCTGTGTGAGAGCGGAGCACTCCACGTATTTGACAGCCTTCAGATCTCTGGCCAGCTTCTCGGCCGTCTCCGGAGTGATTggcttctgtttgtttttcgCAAGCTTCTCAATAGTAGAGGGGTCGTCTCTCAAGTCGATCTGTGTCCCCACCAGCAGGAAGGGAGTCTTTGGACAGTGATGGGTGATTTCAGGTACCCActtttCTTTGACGTTTTCAAATGAAGATGGGGAAACAACGGAGAAACAGACTAAGAAGACATCTGTTTGGGGGTAGCTCAGAGGTCGTAATCTATCATAATCTTCCTGACctGCAGTGTCAAACAGTCCAAGGGTGTAAGGTTCCCCTCCGATCATAACCGTTACTGCATAGTTATCAAAGACCGTTGGTACATATTCGGAGGGAAATTTGTTAGTTGTGTAGGAGATTAATAGACAGGTTTTACCAACGGCACCATCGCCAACCACAACGCACTTGATCGTCTGCATAGCTGTGCTTTTGTTAACAATCCACTCTTCTCATTCAAGATCGTATCCTCCCTGTTTGTTTCTCTGCGCCGGGCGTTGGCAGCTCTGAGCACAGGGCTTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254226 lncRNA upstream 105842 5640822 ~ 5641056 (+) True G187484
TU254209 lncRNA upstream 245022 5499104 ~ 5501876 (+) True G187477
TU254207 lncRNA upstream 251484 5494470 ~ 5495414 (+) True G187475
TU254202 lncRNA upstream 255641 5490085 ~ 5491257 (+) True G187471
TU254203 lncRNA upstream 257068 5488960 ~ 5489830 (+) True G187472
TU254245 lncRNA downstream 33689 5797180 ~ 5798979 (+) False p3h1
TU254361 lncRNA downstream 122311 5885802 ~ 5886002 (+) True G187583
TU254362 lncRNA downstream 125342 5888833 ~ 5899725 (+) True G187584
TU254390 lncRNA downstream 341701 6105192 ~ 6178630 (+) True G187610
TU254445 lncRNA downstream 537361 6300852 ~ 6302587 (+) True G187640
XM_022682302.1 mRNA upstream 15554 5725343 ~ 5731344 (+) True wnt4
XM_007251419.3 mRNA upstream 229333 5508308 ~ 5517565 (+) False fbxo2
XM_022682301.1 mRNA upstream 229333 5508394 ~ 5517565 (+) False fbxo2
XM_022682300.1 mRNA upstream 229333 5511811 ~ 5517565 (+) True fbxo2
XM_022682298.1 mRNA upstream 260485 5472482 ~ 5486413 (+) True LOC103021734
XM_007251413.3 mRNA downstream 1958 5765449 ~ 5771297 (+) True ap5b1
XM_022682303.1 mRNA downstream 16400 5779891 ~ 5798591 (+) True p3h1
XM_007251410.3 mRNA downstream 54493 5817984 ~ 5835626 (+) False cldn19
XM_007251411.3 mRNA downstream 54495 5817986 ~ 5835626 (+) True cldn19
XM_007251407.3 mRNA downstream 478536 6242027 ~ 6258457 (+) True LOC103043936
trnae-cuc_2 other upstream 956851 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1823236 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 2352055 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 2744883 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 5208682 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 383194 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 1329274 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 1428663 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 2348999 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 2493307 8256798 ~ 8271689 (+) False agtrap

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007101 False 2001 mRNA 0.42 6 NC_007122.7 39120306 ~ 39148199 (+)