RNA id: TU254362


Basic Information

Item Value
RNA id TU254362
length 334
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G187584
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5888833 ~ 5899725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgatgtttaatttcatgatgtctcttaatattaaactccttaattacggcaacttttagactctttggcccgtttttctgcgctagaaatgtgaactctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgattttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgattttctgcgctagaaatgcgcactctctccgcttttagactctttgccccgtttttctgcactagaaatgcgcactctctccgcttttagactctttgccccgt

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254361 lncRNA upstream 2831 5885802 ~ 5886002 (+) True G187583
TU254239 lncRNA upstream 45003 5759517 ~ 5843830 (+) True G187493
TU254245 lncRNA upstream 89854 5797180 ~ 5798979 (+) False p3h1
TU254229 lncRNA upstream 125342 5746898 ~ 5763491 (+) True G187487
TU254231 lncRNA upstream 125342 5752167 ~ 5763491 (+) False G187487
TU254390 lncRNA downstream 205467 6105192 ~ 6178630 (+) True G187610
TU254445 lncRNA downstream 401127 6300852 ~ 6302587 (+) True G187640
TU254446 lncRNA downstream 401486 6301211 ~ 6302749 (+) False G187640
TU254454 lncRNA downstream 403041 6302766 ~ 6304222 (+) True G187645
TU254457 lncRNA downstream 403041 6302766 ~ 6304222 (+) False G187645
XM_007251410.3 mRNA upstream 53207 5817984 ~ 5835626 (+) False cldn19
XM_007251411.3 mRNA upstream 53207 5817986 ~ 5835626 (+) True cldn19
XM_022682303.1 mRNA upstream 90242 5779891 ~ 5798591 (+) True p3h1
XM_007251413.3 mRNA upstream 117536 5765449 ~ 5771297 (+) True ap5b1
XM_022682302.1 mRNA upstream 157489 5725343 ~ 5731344 (+) True wnt4
XM_007251407.3 mRNA downstream 342302 6242027 ~ 6258457 (+) True LOC103043936
XM_022682305.1 mRNA downstream 377074 6276799 ~ 6288068 (+) True LOC103043630
XM_022682306.1 mRNA downstream 377074 6276799 ~ 6288068 (+) False LOC103043630
XM_007251405.3 mRNA downstream 392075 6291800 ~ 6298905 (+) True LOC103043323
XM_007251404.3 mRNA downstream 406069 6305794 ~ 6325915 (+) True elk4
trnae-cuc_2 other upstream 1098786 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1965171 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 2493990 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 2886818 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 5350617 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 246960 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 1193040 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 1292429 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 2212765 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 2357073 8256798 ~ 8271689 (+) False agtrap

Expression Profile