RNA id: TU263212


Basic Information

Item Value
RNA id TU263212
length 2811
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G193968
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31301480 ~ 31304310 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatttaaattacaaaaattgcAGAAatgattgactgaagttcagtttaattatttactctatttagtcttgaaaccgagttgaagttacttaaattcatctgaaattaaatgtaattaaaaaaaagcaaatgcagaaagttgcgaaacattttttaaaagtaaattttactcatcttttttttttttttacattgccttccattgaaagtttagaaggttttatctGTCCCCTGTAAAGCTGTTGCTGTATATTTACATGGATACACATGTTTTCggacagtgatgatatttttaattttggagGCCAGTAACAAATTAGCCTTTTGATTGGTTCATATGTGTTACTTCATAAGAATTGTTATTGACTTATCATACAGTCATACAAATTAACATGAGGTCCATCAGTTTTGCTCATTTCAATATtgctgtgtgtatttaagctgctcaaaccacacacacagtacagatttactgctgctgttgtctttcacactgtttaatCAAGGGATACACGGCAATCTGTAACGTCTAGCTCGATTAAAAATATGTCAGCAGTCAAATATTCTATCCTATCTGACTCAAACTCAACCAGAGCTGCTGTTaaatcaaatcattaataacaataattcttgggacaatatattgtccattaaaaaactgttattGTGACTAACTGTAGCCAAGGCCTCATAACAAAACGATCTAGTGTGGTCTATTAAAGCTCTGTGGATGCCTGTTGATGCAAGGTGTAAAAAACTTcattgaaaaaaatgtgaaaaattaattGACAGGGATTTATTTGATTCAGTTTATTTcgtttacatttaaaacagtgtaTTGCTAATCAActcttttttaaccatttttgagAGTGAATCCAATGCCACATTAGCTGCCCTTCAGCTTCATTTGGAGGTTTTACCACAAATgtcttttaaaaacaaaacaagaggcATAATATCCAAGTCATGCAGAAGCAGAAATAAAGTTGAGTACAAAACTGTTAGATTTATTCCAGGAAAAATGACCGGGCCTGTAGTAAAGTTCTGAAGTTCTGAAGTGCAGTATCAGTAGTGTATCAGGTTGAATATCAGCCGGCTGTATTTTGATAGACGATATGTAAACATATTGCGTTATTGAAAGAAATATATTCATTCACACAGTTTTTTCAACAAACGCTTTGATACGAGACTGTATATTGTAAGTGAAGTTAGCTGTACATTTATTTCATCGGGAGTTTTTCGAGTAATtaaggtggggggggggggggtgtaataTAATTTGATTTGTATGGGGGTGCTGTAACTGTGCCATGATCTTCCAGCAGCTTGCATtacagtttatatacagtatttaacttCACTTTTCTTACTGTAGGCCAATCTGAAGTGCACTtactgaagctgaagctgatgtttttttatttttgtttggttATATTTGTTGTACTATCAGCTGTCCGTATATTTTGAGGCCTGACATTAGCCTAGAGTTCTTTGAACACTCAATACATTAAACTTAGTACACCATGGGGCACTTTGGggtttcccagacaggaatTACAGTAGGTCTAGTAgtcctagtcttggactacacagcattttttttcctgaagaGTGCATTAATTGaattagtgtgccttataatccagtgcaccatATGTTTTAAtcctaccagtcaggtattaagacgCGTTtacttctggccacgtcacgcgtacAGAATCTAAAAGAGGATTCGGCTCAGTTTAACTgaacgtgagcggctggtggagcaatggagacttcagaagggaaactcagagctcagtagctcattcacccatagtaaaaccaagtaggagaaacaaaataattaagcaAGCTCCAAAGCCAAAAAGGAACACGGTAGAGTCCACgctaaaaccaggattaatatCGTATTGGCATTTAAACAGTGGGGAGAGCTACGTGACCTGAAAGGGCTctctggaatcggattcatcaaAACACTACTTTTctttattcaaattttctatACTGTCTATCCAACTGAATTGGGGTTGGTGCTGGACTAAAAACAGACTATAAACACTGATGTCGTGCACTGCTTTGTCTCTGTACTGGATTTCCAATGAAAAACGACCTTATAAGCCCACATTTTGATATAACCGGGGTTAACTCACTCCAACCCCATATAAATCTAAACACTAAATACTGCTGTATTTACTCCTAAACACTGaataacatgaaacactggGAGGACTGAAAGGAAGACTAGAGGGAACAGGTGTTTACAGATACACTGTATAAGGCCTGTCAGTGGCTGCGGCAGAGCCTACTACATCAACTGAGCCTTTTTACTGTAGACCTTAATGAATGGGACGTCCTGTAACTGGCTTCTGTTTTGAGCGTCATCCGCTTACTGTTCCTTCTCTCTGAACGTGCAGTTGAGGTTTCttatacaatgcaaaaaaaacacacgtttgttctgccttttttttgtatacgtatatatataatcGAGATTAAAACAGAAGCACAGTCTCtaatcttaaaaaagaaaaaaaactttttttgttaccaAAACAGCATAAGGTCAGAGGTCCTATACTGTACTGCATTGTGATTATAGCATATACCTGTATCTCGCCTATACATATAAGTGGAATCTCgaacaatgtaaatgtaaatgtatatatatatatataaatataaaaaaagaatctcCACgaccttttgtttttttttctgtttgcactgatatctgatattaagaaagaaaaaaagaattatgATATGTCAGCAGTTttatctccatgtttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263200 lncRNA downstream 106642 31194164 ~ 31194838 (-) True G193964
TU263189 lncRNA downstream 132597 31137974 ~ 31168883 (-) True G193959
TU263197 lncRNA downstream 150238 31148645 ~ 31151242 (-) True G193962
TU263196 lncRNA downstream 150584 31148645 ~ 31150896 (-) False G193962
TU263193 lncRNA downstream 155543 31144331 ~ 31145937 (-) True G193961
TU263223 lncRNA upstream 107609 31411919 ~ 31414467 (-) True G193978
TU263226 lncRNA upstream 113439 31417749 ~ 31418526 (-) True G193980
TU263301 lncRNA upstream 146507 31450817 ~ 31529927 (-) False cadps
TU263304 lncRNA upstream 191692 31496002 ~ 31497236 (-) True G194034
TU263294 lncRNA upstream 194915 31499225 ~ 31506147 (-) True cadps
XM_022682788.1 mRNA downstream 14376 31238471 ~ 31287104 (-) True LOC103036366
XM_022682789.1 mRNA downstream 14376 31238828 ~ 31287104 (-) False LOC103036366
XM_022682790.1 mRNA downstream 14376 31238828 ~ 31287104 (-) False LOC103036366
XM_022682787.1 mRNA downstream 70651 31195822 ~ 31230829 (-) False sfmbt1
XM_022682786.1 mRNA downstream 70653 31195822 ~ 31230827 (-) True sfmbt1
XM_022682792.1 mRNA upstream 1257 31305567 ~ 31370546 (-) False LOC103035852
XM_007228716.3 mRNA upstream 1257 31305567 ~ 31370546 (-) False LOC103035852
XM_007228715.3 mRNA upstream 1257 31305567 ~ 31370546 (-) True LOC103035852
XM_022682793.1 mRNA upstream 126581 31430891 ~ 31435487 (-) True fezf2
XM_022682795.1 mRNA upstream 146493 31450803 ~ 31654210 (-) False cadps
trnae-cuc_20 other downstream 126602 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 129011 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 470534 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 470534 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1121354 30165761 ~ 30180126 (-) True G193737

Expression Profile