RNA id: XM_007228710.3


Basic Information

Item Value
RNA id XM_007228710.3
length 809
RNA type mRNA
GC content 0.43
exon number 9
gene id thoc7
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31778357 ~ 31785020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTGGAGGTGGTTCAGTGAAGGGTCTGTGGTGAACGTCAGTCTCTAAGCTACAGTACAGGAGGTTGGACAAATGGGGAGCATAACTGACGATGAGGTCATCCGGAAGCGCCTCCTCATTGATGGAGATGGTGCTGGAGATGACCGGCGTATAAATGTGCTGCTGAAGAGCTTCATcaaatggtgtcactcaaaTGTGACGCCAGAAGAAGGGTTTACTCAGTATCAGAGGATGCTGGGAACCTTGACGCAGTGCGAGTTCTCCATGGGAAAGACGCTGCTGGTGTACGATATGAACCTGAGAGAAATGGAGAACTATGAAAAGATTTACTCTGACATTGGGCAGAGCATATCATCAGCACATGAGAAGATAGCAGAGTGCAAGAAAGAAATCCAGAGGGCTAAGAGGATACGAAAGAACCGTCAAGaATATGATGCACTGGCAAAAGTAATCCAGCAACATCCAGACAGACATGAAACGATGAAGCAGCTTGCCGCTCTGGACAAAGAGCTTCAGCAGCTTTCACAAATTAAAGAGAATGTGGAGGACAAGttggAGCTTCGTAAGAAGCAGTTTCATGTGCTGCTTAGTACCATCCAGGAGCTTCAGCAAACACTTGAGAatGATGAAAAAATGGAAAGTGATGAAGcgagccaagaaagcccagcagaaAATGGAGACTAGTTTTtcactgtacattttttttttcttttaatgtaatttttcatGATTTCATGAACCAACAATGCaatgcattttgtttttataacagCTGAGTACCTGTTGGAATAAAGGTGATGTTTTAATA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000445 THO complex part of transcription export complex cellular_component

KEGG:

id description
K13176 THOC7; THO complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263317 lncRNA downstream 76105 31597364 ~ 31702252 (-) False G194046
TU263316 lncRNA downstream 76105 31698840 ~ 31702252 (-) True G194046
TU263328 lncRNA downstream 80587 31696272 ~ 31697770 (-) True G194055
TU263310 lncRNA downstream 207069 31546553 ~ 31571288 (-) True G194040
TU263308 lncRNA downstream 254554 31522742 ~ 31523803 (-) True G194038
XR_002651582.1 lncRNA upstream 109482 31894502 ~ 31899990 (-) True LOC111195341
TU263404 lncRNA upstream 112571 31897591 ~ 31898384 (-) False LOC111195341
TU263390 lncRNA upstream 116788 31901808 ~ 31902072 (-) True G194105
TU263444 lncRNA upstream 295995 32081015 ~ 32081371 (-) True G194153
TU263433 lncRNA upstream 296488 32081508 ~ 32083630 (-) True G194142
XM_015602562.2 mRNA downstream 31187 31739871 ~ 31747170 (-) True LOC107197084
XM_022682794.1 mRNA downstream 124147 31450803 ~ 31654210 (-) False cadps
XM_022682807.1 mRNA upstream 56088 31841108 ~ 31844991 (-) True psmd6
XM_022682808.1 mRNA upstream 119215 31904235 ~ 31907805 (-) True LOC111195428
XM_007256437.3 mRNA upstream 144706 31929726 ~ 32080712 (-) False prickle2
XM_022682810.1 mRNA upstream 144706 31929726 ~ 32035374 (-) False prickle2
XM_022682811.1 mRNA upstream 144706 31929726 ~ 32016609 (-) False prickle2
trnae-cuc_20 other downstream 603479 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 605888 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 947411 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 947411 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1598231 30165761 ~ 30180126 (-) True G193737

Expression Profile