RNA id: XM_022682807.1


Basic Information

Item Value
RNA id XM_022682807.1
length 1183
RNA type mRNA
GC content 0.48
exon number 7
gene id psmd6
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31841108 ~ 31844991 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTTTGATTTTGTGCTTTTCAGATATGGCACCGTACTACGAGGCCTTGTGCAAGGAGCTGAAGTGGCCAGTGGACTCAGACCTTCTGGGTAAGATGAAGAAGGCCAACGAGGACGAGCTGAAGCGTCTGGATGATGTCTTGGAGGATGCAGAGAAGAACCTTGGAGAGAGCGAGATCCGGGATGCCATGATGGCCAAAGCTGAATATCTGATTAGAATCGGGGACAAGGAAGGAGCTTTGACTGCTTTCAGAAAAACTTACGACAAAACCGTGGCTCTGGGCCATCGCTTAGACATTGTGTTCTATCTGCTGAGGATTGGTCTGTTTTACATGGATAACGACCTCATCACCCGAAACACTGAGAAAGCCAAGAGTCTGATTGAGGAGGGTGGAGACTGGGACCGGAGGAATCGTCTGAAGGTGTATCAGGGTCTCTACTGCGTGGCCATCAGGGACTTTAAACAGGCGGCCGAACTGTTCCTGGACACCGTGTCCACCTTCACCTCTTACGAACTCATGGACTACAAAACCTTCGTCACGTATACGGTTTATGTGTGTATGATCGCTCTGAAGAGGCCTGACCTCAGAGAAAAGGTAATAAAAGGTGCAGAAATTCTGGAGGTGTTGCACAGTCTGCCTGATGTGCGTCAGtacctgttttctctctacgaGTGCCGTTACTCTATCTTCTTCCAGTCTTTAGCTCGTGTGGAGCAGGACATGAAGCGGGACTGGCTGTTCGCTCCACACTACCGTTACTATGTGCGCGAGATGCGGATTCTAGCCTACAGTCAGCTGCTGGAGTCCTATCGCTCTCTTACACTGGGCTACATGGCGGAGGCCTTTGGAGTCAGCACAGAATTCATTGACCAGGAGCTCTCACGATTCATAGCGGCAGGTCGTTTGCACTGCAAGATTGACAAAGTGAACGAAATCGTCGAAACCAACAGACCCGACAGTAAGAACTGGCAGTATCAGGAAACCATAAAGAAGGGTGATCTCCTGCTGAACAGAGTGCAGAAGCTCTCCAGGGTCATAAACATGTAATCAAATACATCAGAACCGTGGGCTGTTTTTGTTTGAAAGGTTGAGATGTTGACACGTTTTCCAACTTCCAATATTATTGTGGGGcttgacatttttttgtttatgtacagtatataataaaatcTTTTCAAAGAA

Function

GO:

id name namespace
GO:0070306 lens fiber cell differentiation biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263317 lncRNA downstream 138856 31597364 ~ 31702252 (-) False G194046
TU263316 lncRNA downstream 138856 31698840 ~ 31702252 (-) True G194046
TU263328 lncRNA downstream 143338 31696272 ~ 31697770 (-) True G194055
TU263310 lncRNA downstream 269820 31546553 ~ 31571288 (-) True G194040
TU263308 lncRNA downstream 317305 31522742 ~ 31523803 (-) True G194038
XR_002651582.1 lncRNA upstream 49511 31894502 ~ 31899990 (-) True LOC111195341
TU263404 lncRNA upstream 52600 31897591 ~ 31898384 (-) False LOC111195341
TU263390 lncRNA upstream 56817 31901808 ~ 31902072 (-) True G194105
TU263444 lncRNA upstream 236024 32081015 ~ 32081371 (-) True G194153
TU263433 lncRNA upstream 236517 32081508 ~ 32083630 (-) True G194142
XM_007228710.3 mRNA downstream 56088 31778357 ~ 31785020 (-) True thoc7
XM_015602562.2 mRNA downstream 93938 31739871 ~ 31747170 (-) True LOC107197084
XM_022682797.1 mRNA downstream 186898 31451893 ~ 31654210 (-) False cadps
XM_022682808.1 mRNA upstream 59244 31904235 ~ 31907805 (-) True LOC111195428
XM_007256437.3 mRNA upstream 84735 31929726 ~ 32080712 (-) False prickle2
XM_022682810.1 mRNA upstream 84735 31929726 ~ 32035374 (-) False prickle2
XM_022682811.1 mRNA upstream 84735 31929726 ~ 32016609 (-) False prickle2
XM_007256438.3 mRNA upstream 84735 31929726 ~ 31969938 (-) True prickle2
trnae-cuc_20 other downstream 666230 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 668639 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 1010162 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 1010162 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1660982 30165761 ~ 30180126 (-) True G193737

Expression Profile