RNA id: TCONS_00011703


Basic Information

Item Value
RNA id TCONS_00011703
length 4761
RNA type polymorphic_pseudogene
GC content 0.50
exon number 17
gene id XLOC_005932
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 21888214 ~ 22095934 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGCCGAGTGAAGATGGCGGCTCAGAGAGTGATGCTGTCAACGAGAGTTTGAGTTCGCTTCtcatttttttaacttaataaacatttGAGGATCTTTTTACGGATAGCCGTATCAAAGGAAACTGTATCGGTTGCTGCTCCTGGTCATTTAACAATGGGATCTCATGTTCTTCCAGAGCCTCTTCATTTTGCAGCCCACACTACAGCACACTTGTCATTGTGAGAAATTCAGTCTCAGgTCTTCGGCTCTGCTGATAGACTCCCTCCAGTACGGTGTCTGAACACAAGCTGAGGTTCACACACTTCCACCCAGGACAAGTCAACTAACACTGACCGATTTATCAAGCTCTCTTATGACCAGCTGCAGCTGCACAAAgGTGTCACTCATTCAGCCCAATGGTGAATGCATCATTCATGCTGGGGCTCTGCAGGGGGCAATGTTCACCGTCCTGCTCCAGTGGTGAACACCCTCAGAGCACCCACTGAGGCCAGTGGGGCAAGTGGAGCATCGGGCTTGAAGCTCTCCAACATATTCCACATCGCCCACTGCACTAAGAGGCACATTCTTGTTTGAAAGCTTGGCACAAAGCAACGTAAAAGAAGTCAGCAGTGAAACAGCTGGTCCTTTGTCAAGTGGTGGTGGTGGAGGAGGAGTGTCAGAAGTTATCAAGAAACCCAATCCTCTTATCCCAGGCTCAAGACGCCAGCCAAGAGCAAGTGCACTCAGGGAACGTGTGGTGGGGGTGAAAGTGCTGGCTGACCTCATTGGAGGACTAGGGGCTAGAGGCAGCAGTCAAAGCGGAGACACACGTCATGGGCTATGGGGGCCATGGTGACCTAGCATAAATGGCTACTCCTGACCCAAAGCTTGTGCCGGTGTCTGCTGCTCAGCCCTGCTCCTTTTTCCTTCTCTTTTCCTCTGTGTTATCCTCCTCTTGCTGTGAACACTGCAACGGTCAGGCTCTGGGCCTCCCCTTTGCCCCCCTCTCTTCCCCAGTCCCACTTTTGAGTTGTGGCCATGGGGCTGTGGAAGTTAGTGCGGGGCGTCCGGCAACTCGAGCTGCACCGCCTGATCCTGGCTCTCATAATTTTCTGCCTGCTGTCCATGGCTTTCCTGGCATACTATGTCAGCAACAGCCCTAAAATAAAGGAAGCGCCCCCTTTGCCCTTCAGTGACTGTGGTGGGGTTGTTGCAGATGCAGCAGGGGGGCAGCGGACTCCTCTTTTCCTGCCACCTTTTTCAGGCCGGCAGAGGACAGTTAAAGTGGTGGATAACTCCCGAACGGAGCCTGTGGTACTGGTCTTTGTAGAGAGCATCTACTCACAGCTCGGGCAAGAGATTGTGGCTATTCTGGAGTCCAGCCGCTTCCGTTACCACACGGAGATTGCGCCCAGTAAGGGTGACATGCCTACGTTGATGGAGCGGGATATTGGCCGATATGCCTTAGTCATTTATGAGAACATTCTGAAGTATGTCAACTTGGATGCTTGGAACCGTGACCTGTTGGATAAATACTGCTCAGAATTTGGCGTAGGCATTATCGGCTTCTTCAAAGCTAATGAGAACTCTCTGCTCAGTGCCCAGCTGAAGGGCTTCCCATTGTTCCTGCACTCTAATCTGGGTCTACGGGACTACCACATAAACCCTGCGGCCCCATTACTGTATATCACCAAGCCCAATGAAGTAGAGCAAGGCCTACTCCCCGGTGATGATTGGACAGTCTTTCAGTCTAACCACAGTACCTACGAACCGGTGCTCCTGGCCGTCACAAAGTCCTCTGAAGCGCTGGCCCACCTAGGCCCCCACAGAGCCCTTCATGCCACTGTAGTCCAAGACCTTGGGCTTCATGATGGCATTCAAAGGGTGCTTTTCGGCAACAATCTTTCATTTTGGCTGCACAAGTTGATTTTTGTGGATGCCATAGCCTATCTGACAGGAAAAAGACTCTGCTTGTCCTTGGAGAGATATATGCTGGTTGACGTGGATGATATATTTGTGGGAAAGGAGGGTACACGGATGAAGGTGACAGATGTGAAGGCTTTGCTCAACACACAGAATAAACTACGAACACTGGTTCCCGACTTCACCTTCAATCTTGGCTTCTCTGGGAAGTTCTACCATGCAGGTAcagaagaggaggatgaaggagATGACATGCTGCTGCAGCACCGGCATGAGTTCTGGTGGTTTCCACACATGTGGAGTCACATGCAGCCTCACCTCTTTCACAATGTCAGCGTGTTGGCAGAGCAAATGAGACTCAACATGCAGTTTGCACAGGAGCATGGTATACCCACAGACATGGGCTACGCTGTTGCGCCACACCATTCAGGGGTGTATCCTGTACACAGCCAGCTGTATGAGGCCTGGAAGAGCATATGGGGGATCACGGTGACCAGCACAGAAGAGTATCCACACCTGAGACCGGCACGCCATCGCAGGGGCTTCATACATCGTGATATAAAGGTGTTGCCTAGGCAGACATGTGGCCTTTTTACTCACACCATCTTCTATAATGAGTACCCAGGAGGTTCGCGAGAGCTGGACAAGAGCATTCGTGGAGGAGAGCTGTTCCTCACTGTCCTCCTAAACCCTATCAGCATCTTTATGACTCACCTGTCTAACTATGGAAATGATCGGCTCGGCCTCTACACCTTTGAGTCTCTGGTGAAGTTTGTGCAGTGCTGGACAAACTTACGGCTACAGACTCTGCCTCCAATGGATCTAGCCGAGAAATACTTCCAGATCTTTCCAGAGGAGATGGACCCACTCTGGCAGAACCCCTGTCATGACAAGAGACATAAAGACATCTGGTCCAAAGAGAAGACCTGTGATCGGCTGCCCAAATTTCTGGTTGTTGGCCCACAGAAAACAGGTACCACAGCTTTGCACTCCTTCCTAACCCTTCACCCCGCCATCACCAGCAACTTCCCCAGTCCAGTCACCTTTGAGGAGATCCAGTTCTTCAACGGGCCCAATTACCACAACGGCATTGACTGGTACATGGACTTCTTTCCCTTCCCCTCAAATGTCAGCACAGACTTCATGTTTGAGAAAAGTGCCAACTACTTTGACTCAGAGGTGGCTCCAAATAGAGCTGCCGCCTTACTGCCCAGAGCCAAGATCATAGCAGTGCTCATCAACCCAGCTGACAGAGCTTACTCGTGGTATCAGCATCAGCGAGCACACCAGGACCCCGCCGCCATAAACCACACTTTCCATGAGGTGGTAACAGCAGGTCCCTCTGCATCTAAAGAGCTGCTGACCCTTCAGAACCGCAGCCTTAAACCCTGAACTTACGCCACACATCTAGAGCACTGGCTCGTGCACTTCCAGGCCAGACAGCTTCATATAGTGGATGGCACCCTGCTCCGCTCCAACCCAGTTTTGGTGATGGACGGCATCCAGCGCTTTTTGGGGATCACCCCAATATTCAACTACACCCAAGCTCTTGTCTTTGATGAGGGTAAAGGATTCTGGTGTCAGAGGCTGGAAGGTGGACGTCCGAAGTGTCTGGGGAAGAGTAAAGGCAGAAAATATCCTGAAATGGCCCCTGAGACTCGTGCCTTCCTGACGGAGTATTACCGGGAGCACAACCTGGAACTGCTGCGGCTGCTGAATCGATTGGGACAGGCGTTACCCTCCTGGCTCAGAGAAGAGCTCCAGAGCACCAGCTGGAGCTGAGAGGACGTCCATTATCTGAACGCCTGAAAAACACTGTCCGCTCACTACAGAGGTACCAAAACCACTCTTCAAAACCATAGTAGCAGACGAAATGACTGACGGCACAGAGTGGACTGCAAACCTCAGCCTCTCGCTGCTGCCGAGGTGCTCACATGACACGATGAAGACGAGGGAAAGCTGAGAAACGTAGTCCCTCCTCTTCTCTTAATGACAAGACCTGCGAATCAGGACCAGAATGCACTAGCGGTGTGGACAAGCATGAATTTACTGGTGacttaaaactaaaacacacaaaGTCTAGCCTTGCTCATCTCGTCTGAGGAATGATTGTAAAACATTGTACATTTAAAAGCGTTGTATATTTTGGGTCCGCTCGGGTGGGATTGTCGACAATAGACAGCGTTTGTGTACAGCCAGAGCTCTGTTTGAGTAGGACGTCAAGATGACGTGAGAAACCCAACGGCTCTTCTCCTCTCCGCACGCACAAACGCACAAAGCTGGATCACAAACCAAACGGTCAGAAAGTATATGCAATCGAGGGAGCATCTGTACATGTCTGAATCCAGTGGAAAGCTTTTAATTCAAGTGTCTTATCAGGTGTTTCCCTGTATTTATCCTAACCATGCACTTTCCTTTACActacacacacactgatgtgtGAAAGTCGATGCAGGCGCTGTGGCAGATGTGTGTTGTATGTCAGGAGctgtgaaagcaggagaggagaaGGGCTGTGCTGGGCTTTGTAAACTGTCCTACACAAGGAGAGGCATCtgttttgtccttttttttttgtaaaaaaaatgtattttaaaaaactcAACGCTGTATTATCTCTAATAAACTCTTAGAGAGGTTGAGTATGTTTGTGTCACTCATTTGATCTGTAGTTTGGGTAACACTCTATTTTATGAATCATCGATATTTACCTTCGGCTCACTCGCCTCaattaagtttggtttttggcccttctaAAGAAAAtgtttggccacccctgctctaaaaggattttaaaagtattcaggcataagaacttgtactgtttgtaactttaataaacatgacttttattaaa

Function

GO:

id name namespace
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019213 deacetylase activity molecular_function
GO:0008146 sulfotransferase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-182 Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and deacetylase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in head and immature eye. Orthologous to human NDST2 (N-deacetylase and N-sulfotransferase 2).

Ensembl:

ensembl_id ENSDART00000162709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013593 lncRNA upstream 194636 21687228 ~ 21693578 (+) True XLOC_005928
TCONS_00013395 lncRNA upstream 469263 21418611 ~ 21418951 (+) True XLOC_005925
TCONS_00011684 lncRNA upstream 1028787 20856611 ~ 20859427 (+) False XLOC_005924
TCONS_00013592 lncRNA upstream 1028787 20856941 ~ 20859427 (+) True XLOC_005924
TCONS_00013394 lncRNA upstream 1099965 20787599 ~ 20788249 (+) True XLOC_005923
TCONS_00011712 lncRNA downstream 93795 22189729 ~ 22199148 (+) True XLOC_005935
TCONS_00011750 lncRNA downstream 516927 22612861 ~ 22614141 (+) True XLOC_005943
TCONS_00011758 lncRNA downstream 612541 22708475 ~ 22715094 (+) False XLOC_005947
TCONS_00013594 lncRNA downstream 641181 22737115 ~ 22741976 (+) True XLOC_005949
TCONS_00013396 lncRNA downstream 725774 22821708 ~ 22823874 (+) False XLOC_005950
TCONS_00011699 mRNA upstream 1902 21826369 ~ 21886312 (+) False XLOC_005931
TCONS_00011698 mRNA upstream 1902 21826369 ~ 21886312 (+) False XLOC_005931
TCONS_00011697 mRNA upstream 2652 21826096 ~ 21885562 (+) False XLOC_005931
TCONS_00011701 mRNA upstream 17050 21870269 ~ 21871164 (+) False XLOC_005931
TCONS_00011700 mRNA upstream 23500 21862050 ~ 21864714 (+) False XLOC_005931
TCONS_00011707 mRNA downstream 8364 22104298 ~ 22114795 (+) True XLOC_005934
TCONS_00011708 mRNA downstream 23864 22119798 ~ 22243311 (+) False XLOC_005935
TCONS_00011710 mRNA downstream 23942 22119876 ~ 22238320 (+) False XLOC_005935
TCONS_00011709 mRNA downstream 23942 22119876 ~ 22238320 (+) False XLOC_005935
TCONS_00011714 mRNA downstream 153702 22249636 ~ 22263785 (+) False XLOC_005938
TCONS_00011702 other upstream 2657 21874110 ~ 21885557 (+) True XLOC_005931
TCONS_00011687 other upstream 266624 21609707 ~ 21621590 (+) True XLOC_005926
TCONS_00011681 other upstream 1639205 20248893 ~ 20249009 (+) True XLOC_005919
TCONS_00011680 other upstream 1861130 20026967 ~ 20027084 (+) True XLOC_005918
TCONS_00011675 other upstream 2571444 19305824 ~ 19316770 (+) True XLOC_005914
TCONS_00011711 other downstream 27156 22123090 ~ 22123205 (+) True XLOC_005936
TCONS_00011713 other downstream 107590 22203524 ~ 22203638 (+) True XLOC_005937
TCONS_00011721 other downstream 207982 22303916 ~ 22317156 (+) False XLOC_005940
TCONS_00011743 other downstream 384923 22480857 ~ 22549811 (+) False XLOC_005942
TCONS_00011748 other downstream 460004 22555938 ~ 22602566 (+) False XLOC_005943

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_11319290_11334375.mRNA True 4247 mRNA 0.50 18 CI01180000 11319290 ~ 11335298 (+)