RNA id: TCONS_00011708


Basic Information

Item Value
RNA id TCONS_00011708
length 4506
RNA type mRNA
GC content 0.45
exon number 22
gene id XLOC_005935
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22119798 ~ 22243311 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGCGAGAGATCTCCCGAAACCTGAGCGAGGCGCTCCCGGAGACACCACAGAGGCGAAATCCTCGTAAAGCGCAACATGGCTACAATTGTAACCTGCACCAGGTTCACAGACGAATATCAGCTGTACGAAGAGCTTGGAAAGGGTGCCTTCTCTGTTGTTCGGCGATGTGTAAAGAAATCAACCGGCCAGGAATATGCTGCTAAGATCATCAACACAAAAAAGTTGTCGGCAAGAGATCATCAGAAGCTGGAAAGAGAGGCCCGGATCTGCCGTTTGCTTAAACACCCCAACATAGTGCGTCTCCATGACAGTATCGCAGAAGAAGGCTTTCATTACCTGGTGTTTGACCTGGTGACTGGCGGAGAACTGTTTGAAGACATTGTTGCAAGAGAATATTACAGTGAATCAGATGCCAGCCATTGCATCAATCAGATCCTGGAAAGCGTCAGCCACATCCACCAGCATGACATTGTGCACAGGGACCTCAAGCCAGAGAACCTGCTGTTGGCCAGTAAGATGAAGGGGGCGGCAGTGAAGCTGGCTGATTTTGGCCTTGCCATCGAGGTGCAGGGAGATCAGCAGGCCTGGTTTGGTTTTGCTGGCACCCCTGGATACCTCTCTCCAGAAGTCTTGAGAAAGGACCCTTATGGCAAGCCAGTTGATATCTGGGCCTGTGGTGTGATCCTGTATATTCTGCTGGTGGGTTATCCTCCTTTCTGGGATGAGGACCAGCACAAACTGTATCAACAGATCAAAGCTGGAGCCTATGATTTTCCCTCTCCAGAGTGGGACACTGTTACTCCAGAGGCCAAAAACCTCATCAACCAGATGCTGACCATCAACCCAGCAAAGAGGATCACGGCTGACCAGGCACTCAAGCATCCATGGGTCTGCCAACGCTCCACCGTCGCCTCCATGATGCATCGTCAAGAAACCGTTGAGTGTCTGCGCAAGTTCAACGCCCGCAGAAAACTGAAGGGAGCCATTTTGACCACTATGCTGGTGTCCAGGAACTTCTCAGTGGGTCGGCAGCACACCAGCCCAGCCACCCCCACCACCAGCACCGCTGCACTGGCACAGGAAGCATGCAAAAGCTTACTGAACAAAAAGTCTGATGGCGTGAAGCCAcagacaaacaacaacaaaaacagtgtAGTAAGCAGCAGCACCAAAGACAGCAGCATATCATCCACTGCACCAATGGAACCACAGACCACAGTCGTGCACAATCCAGCCGATGGCACCAAGGGATCTACAGAGAGCTGTAACACCACAGAAGAGGAGGACATGAAAGGTAGGAAAGCTGATCCACCACATGATGTTAAGAATGTTGCTTGGAGCAGTTCAGGTCAGAGCTCCTGTCCTGATTTAGAGCCTGCTGTACCTGCTCCAGCCTCTACAACAGCAGGGGGCAGCAGCGTAAACAGGCAGCAGTCACGAAAGCAGGAGATCATTAAAATCACAGAGCAGCTGATTGAGGCCATCAACAATGGAGATTTTGAAGCTTACACGAGGATCTGTGACCCTGGCCTGACCTCGTTTGAGCCGGAGGCACTTGGAAACCTGGTTGAGGGAATGGATTTCCACAAGTTCTACTTCGAGAACTTGCTGAGTAAGAACAGCAAGCCTGTGCACACAACCATCCTGAACCCTCACGTGCACCTGATTGGAGAGGATGCCGCCTGCATCGCCTATATCCGCCTGACGCAGTACATCGACGGCCAGGGTCGGCCACGCAGCAGCCAGTCAGAGGAGACACGTGTGTGGCACCGCAGAGATGCCAAGTGGCTCAACATCCACTTCCACTGCTCTGGAGCGCCTGCCGCACCTCTACAGTGAACCAGACAGGCCAAAGCATGCCTGTATACTAAAGCTGATTGGAGCATTTCTTCTCCGTGCACGTCTTGCCGCCTGGAGCCCGGCCAGAAGAGAACCTCTTGAAGTTTTGAAAAACGTGAGGGAAAAAAATTGACACAACTACGAAATCTATTTAAAAGTGGCCTCCACTTCAGTCCAACTCTAGCTAGATGTGGGGCGGGCGGTCACGGCAGCAGCCCTGCCTTCTGGATGCTGCATGCTTCTAATGTCCACACGGGGCGCTGTATTGTCTTTTCCCATAGTCCCATTATCTCTGCTGCCCAACATTCGGAAATGGTgtttaaagtattaataatatattgtaaaatactgAGATCCTATGTAATAAACAACTGGTAGAGGTGGAGGTTTGAAACAGAAATGTGAATTTTCGAAGAGCACACTCCGTTTTAAGGGTAAATGGTGagtttattatgtttaagaaaaaaaaaaaaacgatttgtttgtttgttttacttggGAATGTGATGGCATGGCATATCAGAGGGAACGGAAAAATGTATCAGACGTTGAAGCACCAAAGTGTAGACTCTAGACATCATAGACTTTGAGAAGAGGATGTTTTAATGttgcttttattttcattgaaaagGAGAATGGGCTTGGggaaagtttttttgtttgtttttttctagcTTTCTGTCGTGTTTTTGTGGAACTCATGGTTTTTTAATCTCCGGAATGATGATGTATTTGAAAGTATTTTGTGTTTTCAAGACAATTGTTTTAAAGTGGGACACGATTTAATATAGTTGTGCATAAACAGATATTTATAAAGAGAAAGGACAAAACAGTGTGTGGTGTCCGGGGGGAAAGGGTGTTGTGcgtttgcttgtgtgtgtttgtgtaagtatAAATGTTCTTTCTTGGGTTCAAGATGCTTGTTGCTATGTAGTGTTTTGCGTAGATCTTCTTTACACACACTTCCACGTGAGGCCTAAACTCAAgttgagttgttgtttttgttgttttgcctTCCTCTGTTTGCTCCCGGCTCTCGGAACCTGAAGTTGCAGAACTCTCTCACTTTTGATTAGAGTTTGGAGTATGTCTCCTGGTCCCCAGGGGGCGCtaaacactacacacacactcatagcccTCACCCTCCCTCACAGAGTTACTCGGCCCACCCTTTTAGGCTTCCAGCTGCTGTGCACATCACTTTGTAGACTATAAGCATGTAAAAAAATGGAGAAAATGATATGGCCTGTACTGTTTTGCACATAAGCTTGAGACTCTATGCTGTTCTGTTCACTTTTTTGTGGACCGCTTTGCAACTTCAGGTTATGAAATCCATCCAAGggatctttccatccatccaaggCTTTAGAAGAAGACCCATACTGTCACATTATCCCTCCATAAGTGTCTGGACACTTGTTTTGGCGCTGTTTACTTTGGCTCATCATCATACAGTGCGATTTGATTTGTGGTTTTGGTGAGACAGCGATGACCCGATCGTCTACAAGCAGGGAAATGAATGAAATTGACTTGATGAATGCAGTTCCAGGGTGTTTTAGGGTCCATTTTGTGTTTTAGATTGATTTTCTTGTTTGATTTTTCTAGTATAACTTGTAAATACCAACGCAGATCATTGATGAACGGCAAACTTCATCCAGATGCACGTACACAGAACTCACTGTTTGGTCCACACTTGTTGGTTCGGGTGTGTTAAAGCACATGGACACACGTTGTGCTCCCTTTAAACCTTATCTGTGTGACGGTCATACATCAGAACACTGTTTTGGGCTGTGTTATGTAGAATCCTGTGTGAATTGTGATGCCTAGGGGGTTTGCAGTTCCCCTTTTACTCTGTGCTAAGCCATTTCTTGTGACGTTACCTTTTAAAGTTGGTGAATTGTTGCACCCAAGTCTGTGTGATTAAAAAAGGGAGGAAAGAGAGTACTCCTGCCCTAAGGCATCTTGTTAGTGCGTTTACTTGTCCACAGATGAAGCCGTCTGGCACTGTGATGTCTGCCATACTTCATTCTGCGCTCTTTGTTGCCCCCTGCTGCAGTGTGTCTTATAGCAGTGTGATCAGACCTAGTTCACTCATAGTGCGTCCTCTCAGATAACTGTGTccttgttttaaaactaaaaaataaagtgcaGTTTAGTCAGTTAGACTCGCATACAAATGTAAATGGAATTAAATGTTTCCAGATGAGGAGATTGTAGTTCTTGTATTTAGGACGGACAGCTTTGTATGCTAGGTGAAAACTTCCTGAACTAAATAACTCCCACAACCCAAACACATATGCAGTTGAGCAGAAGGAAAATATGCATGTGTAACTTTCTGGTAATAATTTTCACTGTCTGTGTTACCTAAAATTGAAATCTGTGTATATTACCTGCATCTTCAAGGTAAACGAGATGTGACTCTTGAGTTTCCAGTGCTAAAAATCAAATGCTAATTTTGTAAAGAAATGGACTAAAAGAGATTAACACAACGTTAGCTTGGTATGTTTCCCCATTcttgttagttttttttgttttttttgttttttgtttttgcattgtaaCCATATATGATGGGACTACATATGATTATACTCTGAGGTTTAATTGGATGCTGGATTTTTTTGCATGAccatacaattaataaaaactatGAATTTAAATCTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0001666 response to hypoxia biological_process
GO:0043005 neuron projection cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070323-2 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Involved in pronephros structural organization. Acts upstream of or within response to hypoxia. Predicted to be active in cytoplasm and neuron projection. Is expressed in brain; liver; retina; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human CAMK2G (calcium/calmodulin dependent protein kinase II gamma).

Ensembl:

ensembl_id ENSDART00000173206

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013593 lncRNA upstream 426220 21687228 ~ 21693578 (+) True XLOC_005928
TCONS_00013395 lncRNA upstream 700847 21418611 ~ 21418951 (+) True XLOC_005925
TCONS_00011684 lncRNA upstream 1260371 20856611 ~ 20859427 (+) False XLOC_005924
TCONS_00013592 lncRNA upstream 1260371 20856941 ~ 20859427 (+) True XLOC_005924
TCONS_00013394 lncRNA upstream 1331549 20787599 ~ 20788249 (+) True XLOC_005923
TCONS_00011750 lncRNA downstream 369550 22612861 ~ 22614141 (+) True XLOC_005943
TCONS_00011758 lncRNA downstream 465164 22708475 ~ 22715094 (+) False XLOC_005947
TCONS_00013594 lncRNA downstream 493804 22737115 ~ 22741976 (+) True XLOC_005949
TCONS_00013396 lncRNA downstream 578397 22821708 ~ 22823874 (+) False XLOC_005950
TCONS_00013595 lncRNA downstream 596698 22840009 ~ 22841394 (+) True XLOC_005951
TCONS_00011707 mRNA upstream 5003 22104298 ~ 22114795 (+) True XLOC_005934
TCONS_00011704 mRNA upstream 28935 21919786 ~ 22090863 (+) False XLOC_005932
TCONS_00011705 mRNA upstream 28935 21974284 ~ 22090863 (+) True XLOC_005932
TCONS_00011698 mRNA upstream 233486 21826369 ~ 21886312 (+) False XLOC_005931
TCONS_00011714 mRNA downstream 6325 22249636 ~ 22263785 (+) False XLOC_005938
TCONS_00011715 mRNA downstream 6394 22249705 ~ 22263477 (+) True XLOC_005938
TCONS_00011716 mRNA downstream 21603 22264914 ~ 22278415 (+) True XLOC_005939
TCONS_00011718 mRNA downstream 37672 22280983 ~ 22374036 (+) False XLOC_005940
TCONS_00011717 mRNA downstream 37672 22280983 ~ 22374036 (+) False XLOC_005940
TCONS_00011703 other upstream 23864 21888214 ~ 22095934 (+) False XLOC_005932
TCONS_00011706 other upstream 69489 22050183 ~ 22050309 (+) True XLOC_005933
TCONS_00011702 other upstream 234241 21874110 ~ 21885557 (+) True XLOC_005931
TCONS_00011687 other upstream 498208 21609707 ~ 21621590 (+) True XLOC_005926
TCONS_00011681 other upstream 1870789 20248893 ~ 20249009 (+) True XLOC_005919
TCONS_00011721 other downstream 60605 22303916 ~ 22317156 (+) False XLOC_005940
TCONS_00011743 other downstream 237546 22480857 ~ 22549811 (+) False XLOC_005942
TCONS_00011748 other downstream 312627 22555938 ~ 22602566 (+) False XLOC_005943
TCONS_00011749 other downstream 328632 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011768 other downstream 620234 22863545 ~ 22872417 (+) False XLOC_005952

Expression Profile

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