RNA id: TCONS_00011717


Basic Information

Item Value
RNA id TCONS_00011717
length 6913
RNA type mRNA
GC content 0.49
exon number 23
gene id XLOC_005940
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22280983 ~ 22374036 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCAAATCCAAATCGCACTTCGTTGACACCTGAGACGCCAAGCATCGCGAGAGTTGGTTGCCTTGGCTGCAGCACACAGTGACGCTGAGGGATGTTTAAGGTTTAGCTTCAGAAAATAAGAGATTTTCCCTGCCCACCAGCCAGGAGGAGGATGCACTCTACAAGAATCACCTGGAGAAACCTGCATGATTGTCAGCAAGAGATACACATTACAGCCGCTCACAACCGGATCACAGATGTCTGCCAGACAGCCACTATACACAGTGTTGTGAAGATTCACGCCCTGTGACTTGTTTACAAGCAGGACAAGACTGTTGCCGTCAATTTGCACGCTGTTGCTTCTGTTTAAGGGTGTAGCACAAAAACGCTGCAGTGAAGATCACCACGCCTCCCACAACCCAGAAATTTCAGTAAAGCGGTGTGAAATTCCACAACCAAGTCCCAGAGAGCAGTTAACAAGGCCAAGAGACGGTATTTGCTATTTTCTGGCTGATGCAAGAAGACAACAAGAAGCCAACGCCCTtggaaaaaacactttacaagagaaaacacttttttttatatataaaatcaaactaTTGGCCCATTTGAAGAAAATTTGTACACCTACATGCTTCTTTTGGATACAACTTTAACTCATTTCCTCACAGCTTTGGAAAGATGAACTTGGGGTTCCTATTAAGCAGAGGGACGGTTTAAGTTGAAACTATACAGAATTTCTTCACCATGTCATGGAAAAGAAACTACTTTGCATCTGGCAGCAGTGGGTTACAGGGCATATTCACCCCACGAACCATGACATCAATCGCCCCAAGCAAAGGCCTAATCAACGAGCCGGGACAGAACAGCTGCTTTCTAAACAGCGCTCTCCAGGTTCTCTGGCATCTGGATATCTTCCGACGGAGTTTCCGGCAGCTCACCACACATAAGTGCATGGAGGACTCGTGCATCTTCTGCGCTCTGAAGAGCATTTTTGCACAGTTCCAGTTCAGCAGTGAGAAGGTGCTGCCCTCTGATGCTCTCCGCTGCGCTCTGGCCAAAACCTTCCAGGACGAGCAGCGATTCCAGCTCGGCATTATGGACGACGCGGCTGAGTGCTTCGAAAATATCCTCATGAGGATCCACTTTCACATCTCTGACGAGACCAAGGAGGACATCTGCACAGCCAAACACTGCATCCCTCACCAGAAGTTTGCCATGACCCTCTTTGAGCAGTGTGTGTGCAGCAACTGTGGAGCCTCCTCAGACCCTCTGCCCTTCATTCAGATGGTACACTACATCTCTACCACCTCTCTGTGTAACCAGGCCGTGCGGATGCTGGAGTGCCGAGAGAAACCCACTCCAGACATGTTCGGAGAGCTGCTGAGGAACGCCAGCACCGTGGGAGATCTGCGCAACTGCCCGGGCAACTGTGGAGAGAAGCTGCGTATTCGGCGTGTCCTGATGAACTCCCCAGAGATCATCACCATCGGCCTGGTGTGGGACTCGGACCACTCTGACCTGGCAGAAGATGTCATTCATAGCTTAGGGACTGTCTTGCGGCTCGGAGATCTGTTCTACCGGGTGACAGAGGACAAGGCCAAACAGGCGGAGCTCTACCTGGTGGGCGTGGTCTGTTACTATGGCAAACACTACTCCACTTTCTTCTTCCAAACCAAAATCCGCAAGTGGATCTACTTCGATGATGCTCATGTAAAAGAGaTTGGGCCCAAGTGGAAGGATGTGGTGTCTCGCTGTATAAAGGGGCATTACCAGCCATTACTGCTGCTCTATGCTGACCCCCGGGGGACGCCAGTGTCCGCTCAGGATTTGGCTTCACGTTTAGACCTACATCACTACACAAAAGCGTACTATGACAGTGAGGATTCAGGGCGTGAGCCGTCAATTTCCAGCGACACTCGTACCGACTCCTCCACAGACAGCTATAGCTATAAGCATTCACACTCCCACCACGAGTCTATGGCCTCCCATTTCTCCTCTGACTCCCAGGGAACAGTCATCTGTAATCCTGATAATGACTCTGCCTCTCACAGCAGCCTGGAAACTACAGGTCCTTTGACTGACAGTGATACAGTGCAGCGTCACACTCTCAGAAAAGACGGGGTCTTGGACAGAAAAGCAGGAGTTTTAGACAGGAAACGAAGTGCCAGCAGGCCACGAAAATTCGAGGCTCGGGGTGATTCAAGGAATCGTGTCTCTAAGACAGATGAAGTGTTGTCTGCCGGATACCACAGCGAAGGTGAGACTTTAAAAGAGCAGCAGGTTCCTCGTTCCCTACCTAAACCAAGCTCCAGTCGACTTCGAGACTTTAAGGAGACTATGAGTAACATAATACACAACAGGCCACTTTCCGCATCGTCCTCTGGATCTGTTTGCCCACCCGACTCCACAATTAAAGTCAGAGACTGGGAAGCAGACAGCACCAGTAGCGAGTCCAAGTCAAGCTCTTCTGGAGGGCGATACCGTCCACCGTGGAAGCCTCGGCGTGAGGCACTAAACATCGACAGCATCTTTAGCAGGGAAAGACGCAAGCAGGCAGGGTATAGTCCACTAGGAGCCCTGTTGTCTGAAGACACCGGACCTCAGGTGGGCTTGATGTCCACAAAGCAGATCACTTTTCAGGACATACCAGGACCTCTAAGACGAGGCTCAGAGCAGCCCCCTCGGCTCATCCAGAGGATGGAGAGTGGCTACGAGAGCAGCGAGAGAAACAGCAACAGCCCTGTCAGTCTGGACATGCCTGTTAGCGAGGCCACCACTAATGGCATGCACAGCTTACAAGAAGGAGCGATGATAAAGCCTCCACCTGATGTCAATCCGTCATGGAAGACTGTCACCAAATCCAAAAGCAGCAGTGCCCTATTGCAGGACGTCAAAGCATCAGTCAAGGGCAGCAGTCACACGAGTTTAGCAGGTGAGGGCCGCAGTGAACTGGACGAGCTTCAGGAGGAAGTGGCTCGCCGGGCCAGAGAGCAGGAGTTGCAGAGACGAAAGGAAAAGGAGAAAGAGGCAGCCATGGGCTTCAATCCCAGACCCAGCAAGTTCATGGATCTGGATGAGCTCCAGAATCAAGGGAAAGGGGAAGGCTTTGAGCGCTGTGTGTTGGAGGCAGAGTCTTTGTTAGATCAGTCTCTGAGGCTGGAACAGGCAGGAGAGGTGGCCGCCGCTCTGTCTGTGGTTAACGAAGCAATGTCTAAACTCAGGCATACCTTGCATGAGAGCAGCGCTAACGCTCAGGGCAGGATGCAAAAATGCATGAGGAGAGCACGAGGTCTGCAGCAACGCATGCAACAGAAGCAACAGGAGGAAGAGAAGGAGCAGAAACAGCCCCTCAGTGAACAGTCTGTCCCGGTCCAAATACTTCTGACAAATGTTAAAGAAGAGGATGAGAAGGCCATTTCAGAAGATGCATTAAGACCACCGTCACCTCTCCACATAAAACCTCAGTCTACAAGTAAACCGATTTCTGAAACCCCAGGCCCTCCTGTCCCCTCTTACCATACAGATACATGTTCCCAGAAGGACAATACAGGGGACCACCCTAGTTCTCTTGATGTGACAGAAAATGATCGGGGTCCTAGGGACCTTGTAATTAACACAAACTCTCTTGTACAAACTGCTAGTAAACGCAGTCCTGCCACTGTGCCTGTGATTGCAGCGAATGGCTGTGAGGCTTCCCTGCAGTCCTCCGTTTCGCTCAACACTCCTGCTTATTTCAGTGCCCGTCTCACACCTTCCACCACTGATCACTCTGAAGAAGGTCTCCAGAATCCCCATCGTCCTCAGTCTCTCCATGGCCTGTCCCAAGCACCCCATGCCTGTCAAAAATCACTCCCTGTTCCCTCACGTAATTGGTCCTGTCGCAGTCTGGAGCGTCCTGATAGTCGTCCCACCACGCTGGACTCTTCCATGTATTCTCCAGTAGACCTCAGTTCCCCATCGTCCCCCTGTCCTCCATTCCTGTCTTCACCAGTGCTGGAGCAGCGTCCAGCCGGCCCCATGCCTGTGGAACGTTGGGCAGAGAATGTCAATCGATACTACAATTCCCAGAAGTGTGCGCGGTCGGGACGTGACTCGCCCTGCGAGGAGCTGTCGGAGCTGGACTCACTCTATCAGGCCAGCTTGAAGGCTCCCAGCATACCTAGAGCCACACGGGGAACCAGCCCTCAGCTTGCCAACAGATCAgGTCCTGCTGTTTCTCGTAAACACAGCACTGGATCCTCTGCCACTCTTGGCCGCTCCAAAACCCCCACAGCAGAGATTGAGAGGAGTGCCTACAGGACGCCAACGTACAGCActaaaccacttcagaagCCTGTTTCTGCTGCAGCCTATAATGAACCGCTGGGTGAGGATGAATCATACAGTGCTGAGAACCTGCGACGAATTGCTCGGAGTCTCAGTGGGACTGTTGTTGGAGGACGGACTGACGTACCCCCATCTCGCAGCTTTGACCCTCATGTCTCCAGGATGTCCAAGCATGTGAATGTGCAACTCCCCACACATCGCTCCAGCACATCCCTGCATGTTTTACCACTTCCCTCCCACAATCCACCAATGTTCCCTCACGAACCACCGCCCCAACACCTTCACTCGAGCCACCGTCCTCACCCCGTCCCTACATCATCACACCTGCACCAGCAGACACTGAGGCCCCCTCATGGACAAACAGGAGACTGCCAAAAGACCAACAAGTTTCTGGCTGTGCTTGACCGGGGTGAAGCATTCTCCCGCGAAAACTATCACAACGTCGCACTGAGCTACGGCACTCTTCCTCGGGCCCCTCGTAGGTCAGTTTCATCTGGGCCCCCAGTGTACCAAATGAGGCCAGGATCCTTACCCCGAAACCACCCAGACGCAGCCTACGCCACACTATCCCGCCCTCACCGCACTACAGCACCAAGTAGGACGATGGATGGATTTTACAGGCAACCCCACCAACACCCTTCATTAACAGCTCCAATCCCGCATCACTCCAGCCGTCATCACCCGCACACAGAGCCGCCAACTCAACCCCTCCGCCTCGATGTTCCCCCTGAGAGAGACTGGAGAGCTGCTAGGGACACTCACGTCTTCCCCAGAACAGATCCCCGTGGAGGGACGTCCCGTGGCCATCCTGTCTATATCTGCGGGCTGTGCAAACAGAACCCGGCTGAACCCACTAGAAGCTACTGCCAAGCCTGCAGAGCCCATATGAGCCACTACAGGATGACCAGCTGAGTCCTGCATCCTTCAGCGCACTCATTCTCTGACTTGGAAGTAAACACAAGACCCCTTGCCAATTCTCCGAAGCTCTTCACACAGTACAAAGCAGCAAGATCTTGGGAGCTGCTTTGGCTAAAGTGAAAGACAATGACGTTGCTTTGGCTCAGACGTGATTGTGGAGTGATCATGTTTTAATTGCAGCCGCTGCGTTTAAATGGCGTTTTACCTACAGTAAACGTTTCCACTGCTAATTCGGCTGCAGAGTTGAGTTAGCCATCTCTGCACAAAAGCTGTGAAGAACAAGAGCACTTTGCTGCGTGGGACGCCGCATCGTAACTGACGTGAACACACTAAAAGGATGAACTTTGCCTGCTGATATACAGCGTCTGctctgtatatgcacaaatacgcTTTAGTTTTCAATTAGCATTCCAAGCTAACCTTACTTAGTTCTGTGATTGTAATTTAACTATGTTAACTCAAGTTTAGTGCACTTCAGAAGTGTTAAGTTAGAAGCGTTCCTCTGTCGTAACTTCTCCCATTTTTTGGGAAAACGATGTTTGTGTGTAACTACTTCATTTAGAGGGCTGTGACGtcagtgtgggtgtgtgtgtaagtaATCAGAGGTACATCAGATTCCTCCAGTGTACCAACAGTCAAGTTTCAGACACCTCATTAGCGTTTGTGTTGATATTTTTGTGTACAGTATTGTTCTGCCTGACAGTAGCACCAACACATGTGATCTCTTCAATTGTTTTGGTTTTGCAGTAGCAGCAGTTTACCGTTTTGATTTATACGCTATATCTTACATTAACTGTTAAGTGCAACACTATTTCATGGTTGTTTTAAGACTTACTGTAGGTGAACAGAAGGACAGAGCATTCTGCAGTGCCTTGGTTTGTGAAAGGCAACGTAAATAGGTGCCAGACTGTGTCCATATGTTAGATTTCCAGCCATATAATAATCCATATTATAATAGTGCTAAATTCAAGAGTTGCAGTACTCAACTATTTCAATTTTTCACCCCCAATGGAGAATGAATGCCTTTTATGTTGATTTTAGGTTCACAGACGCTGTTGAAGTGAAACTTGTGGTCTGAGATGGTTCATTTAGTTAGTCTGACACATTGAGAATGTTAGGAGTATCTTTCAGCAGTTAGCTGAGTTTGATGGTGCAATGTGCCATTTCACGGAGATGAAAGTGTTACCTGCTCATATTTCTGAAACAGGGCcaaacttttttgttttcataCATTTTGGAGCATGTCAAATACCTCAACCAATAACATGCTCTTGTTTTTATTTCACCAGAACAGTTTTGCATGTACTATGGTTACCTAAATCAGGACCTAACGGTGAATCGGAGTGCCTCTGCATTGAATTCCCACTCGGCGATTTATCtaaagcttttttgtttgtttgtttgtttgtttgtttgttttgcctggCCAATATGCAGTGCAACACTGCCCTGGCGTGATTACTGACAACAGGGATCTGTGACTGATTTACCCATCCCTTCCTTTCTTTCGGAGTTAAATACAAACagatatggcaaaaaaaacaaggctgtatatataaaattgtgtaaAGATATTCAGTCCTTGATCTTAAGATGGATTCGGATTTGTTGTAAATGCTGTGCTAGAAATGAAACTTGTATTTTTGCAATAAAGTTATATTAAGCTCCAGTCAGGAGCAGAACGCTG

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090828-2 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination. Orthologous to human USP54 (ubiquitin specific peptidase 54).

Ensembl:

ensembl_id ENSDART00000173258

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011712 lncRNA upstream 81835 22189729 ~ 22199148 (+) True XLOC_005935
TCONS_00013593 lncRNA upstream 587405 21687228 ~ 21693578 (+) True XLOC_005928
TCONS_00013395 lncRNA upstream 862032 21418611 ~ 21418951 (+) True XLOC_005925
TCONS_00011684 lncRNA upstream 1421556 20856611 ~ 20859427 (+) False XLOC_005924
TCONS_00011750 lncRNA downstream 238825 22612861 ~ 22614141 (+) True XLOC_005943
TCONS_00011758 lncRNA downstream 334439 22708475 ~ 22715094 (+) False XLOC_005947
TCONS_00013594 lncRNA downstream 363079 22737115 ~ 22741976 (+) True XLOC_005949
TCONS_00013396 lncRNA downstream 447672 22821708 ~ 22823874 (+) False XLOC_005950
TCONS_00013595 lncRNA downstream 465973 22840009 ~ 22841394 (+) True XLOC_005951
TCONS_00011716 mRNA upstream 2568 22264914 ~ 22278415 (+) True XLOC_005939
TCONS_00011714 mRNA upstream 17198 22249636 ~ 22263785 (+) False XLOC_005938
TCONS_00011715 mRNA upstream 17506 22249705 ~ 22263477 (+) True XLOC_005938
TCONS_00011710 mRNA upstream 42663 22119876 ~ 22238320 (+) False XLOC_005935
TCONS_00011724 mRNA downstream 47115 22421151 ~ 22464121 (+) True XLOC_005941
TCONS_00011725 mRNA downstream 102706 22476742 ~ 22549811 (+) False XLOC_005942
TCONS_00011726 mRNA downstream 102729 22476765 ~ 22513626 (+) False XLOC_005942
TCONS_00011727 mRNA downstream 102748 22476784 ~ 22522867 (+) False XLOC_005942
TCONS_00011728 mRNA downstream 102773 22476809 ~ 22522831 (+) False XLOC_005942
TCONS_00011713 other upstream 77345 22203524 ~ 22203638 (+) True XLOC_005937
TCONS_00011711 other upstream 157778 22123090 ~ 22123205 (+) True XLOC_005936
TCONS_00011703 other upstream 185049 21888214 ~ 22095934 (+) False XLOC_005932
TCONS_00011706 other upstream 230674 22050183 ~ 22050309 (+) True XLOC_005933
TCONS_00011702 other upstream 395426 21874110 ~ 21885557 (+) True XLOC_005931
TCONS_00011743 other downstream 106821 22480857 ~ 22549811 (+) False XLOC_005942
TCONS_00011748 other downstream 181902 22555938 ~ 22602566 (+) False XLOC_005943
TCONS_00011749 other downstream 197907 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011768 other downstream 489509 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011791 other downstream 1447150 23821186 ~ 23821300 (+) True XLOC_005962

Expression Profile

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