RNA id: XM_022682443.1


Basic Information

Item Value
RNA id XM_022682443.1
length 3986
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC103026384
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15359175 ~ 15407969 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCGTCAGATCATCAGAATTACAGCAGTTTTACTGGATTCTGAAGGTTTTTACAGGATTTCTCAGGATTTAACTGGTTTTACTGAGCGGCTGGTTTTGATCTCCAGGCTGGGAGAAGATCAGGAGGTGCATGGACGGGCTCTGAGGAATCTATCAGGGGTTTATTTATCGCAGAAATGCCCGAGATGATCTCGGTGGAGGAGTTTATCTCAGAGACTCTGGAGGACTGGAGCTCCCCCACAACATCCGCCTTCATCACCAAGATGACCAGCTGCAGAAACTCCGCCCACACCGTGGAGGAGGCTTTGGACTCAGACCGGACTGTACTGCAGAAAATGAAGAAAGCTGCTAAAGCCAAGCATTCATCAGGTCAAGATCATATATCACATCTGGAGGTGTTCATTAACTCCATGGAGAAGCTGGCGGTGAATTTCCGCAGTAACGGAGAACAGGAAGTGGCCTCGGCCTTTAATAAGTTCGCTGAGTTCTCTAAAGAGCTGCTGACACCCATGAAGAACCTGTTGAAGAGCATGCTGCACAACATCAACTTCTTCCTGGACTCTCTGGTGAAAGGGGATCTGAAAGAGGTTAAAGGTGACCTGAAGAAGCCGTTTGATAAAGCGTGGAGGGATTATGAGAGTAAATTCAGTAAGATTGAGAAGGAGAAGCGGGAGCTGGCGAGGCAGTACGGGATGGTGAGGACGGAGGTGAGTGGAGGAGAGATAGCGGAGGAGTTGGAGAAAGAGCGGCGGATGTTTCAGCTGCAGATGTGTGAGTATCTCATCAAAGTCAATgaaattaaaaccaaaaaagGTGTGGATCTCCTGCAGAATCTCATCAAACACTACCACTCGCAGTGCAATTTTTTTCAGGAGTGTCTCGCCGCCACAGAGAAGCTGAAGCAGTACATCGACGCTCTGACCGGAGGACTCAGCACTattaagcACAGGCAGGATGAGGAGAAGAGGCAGTTGTGTTCACTACGGGATCAACTAAAAACTGCAGTACAACCTGAACTTAAagaggattCTTTAAGCAGACAGACAGTGTACAGTATGCATCAGCTTCAAGGCAATAAGCAGTACGGCACCGAGAAATCAGGATTCCTCTATAAGAAGAGTGACGGATTGAGGAAGATGTGGCAGAAGAGGAAGTGCAGCGTCCACAACTGCTATCTCACCATCGCTCACGCCACTcCTAATAAATCTCCGGCTAAGCTGAATCTGTTGACGTGTCAGGTTAAACCCAGTGTGGAGGATAAGAAATGCTTCGACCTCATCTCTCATAACCGAACTTATCACTTCCTGGCGGAGGATGAGCCGGACTGTGTGGCgtgGATCTCGGTGCTGATGAACAGTAAGCAGGAGGCTCTGAATGTGGCTCTGGATGAGAGGAGGGCGGGTGGAGAGAGCAGTGTGGAGGATTTAACTCGCTCCATCACGGAGGACGTTCTCCGGATGCCGGGGAATAACGTCTGCTGTGACTGTGGAGCTCCAGATCCTTCCTGGATTTCCACTAATCTGGGGATCCTGACGTGTATCGAGTGTTCAGGGATTCATCGAGAGATGGGCGTCCATCACTCCCGGATTCAGTCCCTCTCTCTCGATAAACTGGGAACTTCTGAACTGCTGttGGCGAGGAATGTGGGGAACTCAGGGTTTAATGAGATTGTGGAGGCCAATCTCCCCAGTCCCTCTCTAAAACCAACTGCAGAAAGTGACATGGCGATACGTAAAGACTTTATTCTGGCGAAGTATTTAGAGTGCCAGTTCGCTCAGCGCAGAGGCGGATCTGCAGATACTCTACGGCGCCGCCTGCAGGAGGCGGTTCATAGCCGCGACGTTTACAGCCTGGTGCAGCTCTACGCCGAAAAAATGGACCTGAGCCTCCCACTGCCCAGCCCACTGCAGgaaaagAGGGAGACAGCGCTGCATCTCGCCGTTTTATTGGCTGATCGGACCTCCCTGCACATGGTGGACTTCCTGGTTCACAACTGtaataATCTGGATGCGCAGACCTCACGGGGGAACACTGCGCTGCATTACTGTTGTCTACACAATAAAACTGAGTGCCTTAAACTCCTGCTGAGAGCAAAGGCCAACACTCATATCAAGAATGAAGGTGGAGAGACGGGTTTGGACGTGGCTCGGAGGCTGAAGCACTCTCACTGTGAAGAGCTGATCCAGCAGTCCCAGAATAACCAGTTTAATATGCACATCCACGTGGAGTACGAGTGGAGGCTTCGGCAGGACGACCTGTACGAGAGCGACGATGATCCGGAGGAAAAGGCGGGTCCGGTGAAGAAGGATCGGTCCAGTCGGCCGTTCAGTTTTTACCACGGCGGCTCTCAGGACCGCGGCGGCGGGATATTCAGCGTGGGGCGGAGACTCGCTCTGGGGCGGGGCGACCACAAACGGGACGTTTACAGCACCCCCAGCCCCCACACCCGCAGCCTGGActcccccccgccccccccgcCCTCATCACCCGCACCACCACTGCCCCCTAGAGTCCGGGCTCCGAATGTCCCGCCCCCTCCGCCGCCGGTCAATCCCCCGGACGGGTGGGTGGAGCCGAGCTTCAGTAAGAGGAGAACTCCGCCCCCTCCACTACTGATCCGACACAAACGAACCCATTCAGAACCGTCTCCTCAGATCCCCCTCAGTCCCCACGGAGCCTCACGTCCCGGATACGCAGATTACGGCGTGCCGGCCAGTCCGCGGGGTTTCAGTATTCAGGACTCTTCTGctctgaagtgtgtctcAGGTTCTCCAAAATTCACCACGACCCCCGCACTCAACTCCCTGTCTGAACTTCCTGAGCGAGGTTTCCGAGCGGATGGGGAGAGCAGCTTCCTGTATCAGACTCCTCCCATCAGCAGTTCAGGACGTCACACCAGCCAATCACCGACCTCCCCCAGAtctttcagccaatcaccaacCTCCCCCCGATTCTTCAGCCTGGACTCCAACGGGAGCTCCTCCTGTCCCAGCGCTCCTCACCCCCTACCCAGACGCACCCTGgtGAAGTCGAAGTTGAAGCGAGTGAAAGCTCTGTACGATTGTGAGGCTGATCATCATGATGAGCTCACGTTCAGAGAGGGGGATGTGCTGGTGGTTGTGGTGGAGGAGGATGCTGATTGGTGGCACGGTTACGTCGAGGGACAACCAGAGAAGACCGGTCTCTTCCCAGCGTCCTTCGTCTCTCCAATGTCCCAATAAAGACATGAAGACAAAGATCCAGAGCGAGTGGAGACAGCTGTGTGAGAGATCTGATTTGACGGTCATGTTGTGTAAAATCAGTGTTATAATGAGATGCATGGCTTTAAAACTCAGAACCAGACGATTCTGAACCGGAAACACTGGATACTTTTCCACCGCAGAGCTAAACGGCTGCTGAAGCCACGCCGTACCGAACCGCGTTAGCGCCGATCCGTTAGCCTGGTTACAGGTTCTGATTTTATTAGCAATGCTGCTCCGGGGATCATCCAACATAACTAAACGTGCTGGTGACCAGGTTCATCTAACATCGCTAACGCAGTGTTAGCAATGCTGTTGAACAGGCTAATCCAACAGTGctaatgcaataataacatgATAATAACCAGGCTCATGCTAACATTATGAAcatggtgttagcatgctgtCCACCAGGGTCATCCTGTGTTGCTAACATGACATTAGCAATGCTTGCAACCTAGCTCATCCAATCACGCTAATGCATCGTTAGCATGCTGACAAGCGTGAGCATCCAACATAACTAAGCATGCTAGTGACCATGTTCATCTAACATGCTCACTAGCATAGCAATGCTGGTGACCAAAATAATCCAATTTGGTTAatatagcattagcattagccaccgACAaggctcatccaacatcactaatgTACAACGGTGCTTAAAAGTTTGCAAATCTTTTAtaattttctacatttctgaacattgttgttttattctataaactacagacaacatttctccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257794 lncRNA downstream 4543 15353437 ~ 15354632 (-) True G190171
TU257566 lncRNA downstream 74460 15209617 ~ 15284715 (-) True G190001
TU257569 lncRNA downstream 141825 15215638 ~ 15217350 (-) True G190004
TU257549 lncRNA downstream 156409 15198426 ~ 15202766 (-) True G189987
TU257514 lncRNA downstream 162116 15059956 ~ 15197059 (-) True G189958
TU257841 lncRNA upstream 148552 15556521 ~ 15569271 (-) True G190199
TU257848 lncRNA upstream 189358 15597327 ~ 15605977 (-) False G190204
TU257846 lncRNA upstream 197747 15605716 ~ 15607905 (-) True G190204
TU257868 lncRNA upstream 310130 15718099 ~ 15798757 (-) True G190214
TU257894 lncRNA upstream 382756 15790725 ~ 15866179 (-) False G190232
XM_007239905.3 mRNA downstream 37000 15318643 ~ 15322175 (-) True LOC103024926
XM_022682441.1 mRNA downstream 53968 15296659 ~ 15305207 (-) True LOC103025355
XM_022682834.1 mRNA downstream 76596 15236982 ~ 15282579 (-) True LOC111195446
XM_022682433.1 mRNA downstream 196414 15134775 ~ 15162761 (-) True LOC107197607
XM_022682426.1 mRNA downstream 228706 15103637 ~ 15130469 (-) False LOC103042998
XM_022682835.1 mRNA upstream 1238 15409207 ~ 15466584 (-) True LOC103026676
XM_022682447.1 mRNA upstream 60244 15468213 ~ 15503648 (-) True LOC103034615
XM_022682448.1 mRNA upstream 60244 15468213 ~ 15501207 (-) False LOC103034615
XM_022682449.1 mRNA upstream 60244 15468213 ~ 15486815 (-) False LOC103034615
XM_022682446.1 mRNA upstream 60244 15468213 ~ 15485646 (-) False LOC103034615
TU257791 other downstream 37004 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2282659 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2739609 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3013793 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 3314882 12043913 ~ 12044293 (-) True G189055
TU257808 other upstream 23698 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 994822 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1425881 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1780696 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1809352 17217321 ~ 17219780 (-) True G190788

Expression Profile