RNA id: TU311713


Basic Information

Item Value
RNA id TU311713
length 3445
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G229288
representative True

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 585602 ~ 589097 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacaacacacacacacacacaacacacacacacacacacatatacacacacagactcatacACACTGCACAAGGACAGATGCACTCGCATGCATACAGCCATATTCATGCTCAGttatatgaacacacacacacacacacacacatacaaacacacacacacatttactgtgggtgtgtatttatgtgtgtgtgtgtgatttacgGTATTCGAGCCAAACCTGCAGGAGGATCTCTGACCATCGTCATCCTTCGGTTTTTATATACGTACCTGATTAAAGTCTGAGCTCAAATCAATCACAGCAACCGATCACCAATCACAgatccaatcaatcaatcagtccaGACAGGAGAGGCtgggagatgctaggctaacaatgctaacaaatGCAGCTCTTAAACTGTCACTAATTTACTCATATCTAAATCTGTCTCTCAGAACAGGCCAAAATTATTGATATGATCTCGTCACTTCTTCATTAATCGCCCTGGTCTAGAACATCATACTCTCATAAAAAAGGTTCTCCAAGGGTTCTAATGAAAATATGACTATTCTATATAGAACTATGACATGCTATGCTAACGTCGCTAACCAACACAGATGATCTCTGATGATCTCTTATCATACGTCCAGATCTTAATTAGTTTGCCAAATCGATGTGATTATTATCAACGCATTACCCTCTGTTAAAAGGAACTTCAAGGGttctaatatatatttgatgGTTCTAAATAGAGCTGTGGCATGCTTTGTTAACGTCGCTAACGAAGATCTGGACATATGATGAGATATCATTATATCTTCTTTAGTTTGCAAAATAGATGTTATTATTTAGAATGCCTTACCTTCTGTAAAAAGGATCTTCGAGGATTTTAATATGAATTTGATGGTTCTAAATAGAGCTGTGACATGCTATGCTGACGTAGCACATGCTATACCTAACACTCTATATAGAACGTGATATGAAATCGTCGCTTCTTCGTTATTTGACCTGAGCTATGACATGCTACACTGATGCTAACGATCTCTGCTGATTTATTATCATATGTCCAGATCTTCATTGGTTTGCCAAATCGATGTGATTTAGAACAAGGTACCCACTTTAAAAAGGTTCTTTAAGGGTTCTAATATAAATTTGATGGTTCTATATAGAACTGTGACATGCTATGCTAACATCGCTAATGAAGATCTGGACATATGATGAGAGATCGTCAGAGGTCGTCAGATATCATGATATCTTCATTAGTTTACCAAATCGATGTAATTTAGAACGTGGTACCCTCTTTAAAAAGGGTTCTAATATAAATTTGATGGTTTTAAATAGAGATGTGACATGCTATGCTAACGTAGCACATGCTACTTAGTAAATGTAGTGATTCTATATAGAacgtatgatatgatatgatatccTCACTTCTTCATTATTCAACCAGGTCTAGAACACAGGTTCTCCAAGGGTTTTAATGAAAATATGACTATTCTATATAGAAATATGACATACTTTGCTAACATCGCTAACCAGGGTTCTAACAAAAATATGACCATTCTATATAAACCTATGACATGCTATGCTAGCGTCGCTAACGAACATTGATGATCTCTGATGATCTCTTATCACACGTCCAGATCTTCATTAGTTTGCCAAATCGATGTGATTTTGAACGCGGTACCCTCTTTAAAAAGATTCTCCAAGGGCTCTAATATAAATTTGATGGTTCTATATAGAGCTGTGATTAGATTAGAGACTTGATTAGATTAGACCATCACTAATTGAATCgtcttttttgtctgttttttaccACGATACACTCTGGGTTCGAATGTAAAAATGAAGGTTCTGTATAGAACTGAACAGGTTTCTCACATTGGAGGATACATTTTAAGATGCTATGCTAACATCGCTAACAAACACTGTACTCTCAATAGAaatacagtgtgtttttttttttttattattatttaaagtcgTCTTTTTCACTTTTAAGAACCAGGCATGTTTCTACAGTTTTTAACAAACCACAAAGAACCTTTTTCATCACTTTCTAAAACTATTTTTAGTCGATAAACTCAAACTTCAATCTCCTCCACACTGGACTGAAGGAACCGGAACTACTTTCAGCGTAATGGGTCTGATGATAAAAGTAGTTAAAGTAGTTCCAGTTCCAgatctaaaatgtttaataaatacatttttttgttttttaagtgtttacaaatttaaatgtttaacatgtttactTTTAAGGCAAATACATGACTTTAGATTTTGTGGGCGGGGTTTACCAAGCTAATGCCGTGCTAATTACAGGCAGTCTTTGTCCAGCGTGTGTTAGCATCGTTAGCATGTAGCATCGTTAGCCTGTAGCATCTGTAGGCAAATCTGTGATCGGTGATCAATCGAGGTTATTGATTTGATTGAAAACTCTTTGTCTGAGATGAGAGAAGCTGAATGAAATGAgtataattgttatttttttgttttttgtttgttttttctttttctttttttcttcttcattgtGTCATGtgacattgttttttaaagcatGGGGGAGGGGCTTCGGGTTCCGTGTAACCAATCAGAAAACTTGAACTATTCTTCGGTATAATGAGGGATTGTGGGTAATGCTGTGGGATGTAGGTGTATGCTGGGTGGCGgtctgttattttaatgttgctgggagtgtgtgtgtgtgtgtgtgtgtgtgcacgcgagtgtgtgttagtgtgcgtgtgtgtgtgataatttATTGATCGCTGTATTAAACATTAAGGGAGAAGCACAAGCTGATGGTAGCGATGTTCGTTGTTATAGCGAGGTTTAAAATGGTAAAGGGAGCTCACCGATTGGCCGAGCTGATCCGAGGCGTCTGATTGGCTGGGGCGGCGAGGTCGTAGCCGTGTCGTAGTTTCCCGTAGTGTCCCCGTTAGTTCTGGTTGTACACTGGTGTTGGACGCAGCGCCGCTCTACTTCCTGTGGACTCGTTTATTCCTGTTTTTTGCGTTTTTCTTTCGTTTTTTTCTGTCGTTTTTCCCGTCGTTCGCTCTGTGGACGTGTCACTGTGTGCAGGTCAGGTCAGTAGCGCCCTCTGCTGCCCAGAGCTGGAGGTGCAGCCTCAACCCTGTGTGACCCGTACAcacttacagtatatacacacacactctctctcttcctctgtacacacacacacacttcctctacacacacacacccctcagccctgtgtgtgtgtgttgtacagcTCTGTTCTCCTCTGTATAGACCCATACCGGCGCTGGCTGGGGTAGAACCGGCCTCTGATGGGTAGGAATGTGACATATagaatattttattgattttgaaGCAGAAactctatataataaaaaaaaaaatctgtaaggtTCATTTGCAATCTCAGGTTCCATTGGaccaaataaagtttttttaatcagaaa

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311728 lncRNA downstream 30438 554919 ~ 555164 (-) True G229298
TU311709 lncRNA downstream 57215 524471 ~ 528387 (-) False G229287
TU311711 lncRNA downstream 57215 524471 ~ 528387 (-) True G229287
TU311723 lncRNA downstream 75435 509857 ~ 510167 (-) True G229293
TU311677 lncRNA downstream 89643 494835 ~ 495959 (-) True G229273
TU311748 lncRNA upstream 9630 598727 ~ 599324 (-) True G229304
TU311751 lncRNA upstream 15072 604169 ~ 604691 (-) True G229305
XM_022685602.1 mRNA downstream 17515 561906 ~ 568087 (-) True LOC103029896
XM_022685588.1 mRNA downstream 38898 528403 ~ 546704 (-) False tbc1d24
XM_022685589.1 mRNA downstream 40557 528403 ~ 545045 (-) False tbc1d24
XM_022685587.1 mRNA downstream 40557 528403 ~ 545045 (-) True tbc1d24
XM_022685598.1 mRNA downstream 66785 498269 ~ 518817 (-) True LOC103036123
XM_022685597.1 mRNA upstream 725 589822 ~ 624742 (-) True LOC103039379
TU311617 other downstream 362289 173215 ~ 223313 (-) True G229233

Expression Profile