RNA id: XM_022685602.1


Basic Information

Item Value
RNA id XM_022685602.1
length 2320
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC103029896
representative True

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 561906 ~ 568087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agacagacattacCCGGCCTACCAGCATGACCGACACACACAGCGATGGTACGACAGTAAGCCCCTGGCCTTCCGCAGTCAGAAGGAGATGTTTATGAAAATGGAGGAATCGTTTAAATTCTGCGCCAAATGTGGGAAAAAGCCTTCAGACACTGCAGACACTCTGAAACGCTGTGCCAGGTGTCTGAATGTATATTACTGCAGTAAGGACTGTCAGAAGGAGGACTGGTCCCTGCATAAGAAATTCTGTCCACAACTTCGTAAAGCTGCGATAGACAGACTCGTAGAGTGGCTCTTATATCAGGGAGACCTTCCCTTCCCCACAGAGGCGTGGTCTCGTCCCACCAAAGAGGTGCGGTCCTTTGAGGACTGGCTCTCCATGCAGGGTGACCTCACGCCCCGCCTTCAGCCCATCCTCTCCAGCCAGAACATGACAGACCTCTGGACCAATGCCTGCCGCCCACGGCCGGAGGAGGCGGAGCTTTGTGAGTCTGTGTGGCGAGTGTGCAGCGAGTTCTTTTCACGCCCGCTGACGATCGGAATGGCGATGCAGATGTACAGCCTGAACCCCTACTCACGCCCACTCACCATCCACGTGGTGGGAGCAGGAAACGCCGAGACCCTGGGGGCCCGAACCACCGACCTGGACGAGCTGAGCCGCATGTTTCCTGGGCACCAGGGCCTGGAGGTGGTGATGGTGGGGCCGGAAGTGGTGAAGCCCATCATGAGGCCCCCGCTGAGGGCGTTTGGACCCAGAGGAAGGGTCTACATCAGCGCCTACAAGGGTCTGTACCACCAGTTCTGGGAGGAAGTCGTGGAGAAAGGGGAGGCGGCCAGACCGGACCTCGTGATCGGGTTTCACCCAGggtTTGAATCCAGTCAGAGTATGTCTGATGGCTGGTTgcccacactgctgctgctgagggaCTACAGTATCCCCACCTTCTTCACCATGAGCAGtgagAGTGAGCTGCAGTATTCTCTGCAGATTCTGCTGGAGTTGGAGATGGACATTAAGGGAACCGGGCCGAACCCCTTCAGTTCCCAGGCCGAGCAGGTGCAGTCCTGCCCCAACAAACAACCCAACTACTGTAACGCCTTCTATCTGCACTTCCAGGGCCTGCTGGAGACCGCCCTGGAGGAGGAGCTACAGGAGTAGAACCACAGAACCTCCAAAAAAACTACAAGACATACAGATTAGCTATAGAACCTTCAATAAGACCCTCCATTTGAACTGGAGATCTTTCAAAGAATCTGCAGAACCTCTCATAGAAATGTAGAAATTCCAGTACAGCTATTTACCCTTCAGTAGGCCCTCCATATAGATCCTCCAAAAGACCTTAAAGTAGACCCTCTGCAGAACCTTCAAAGGAACTGTAGAACTTATAGTAGAAGTGCAGAACCTCCAGTGTAGCTATTGACCCTCCATGCAGATCATCCACAAGACCTTCCAGTAGATCCTCTGCAGAACCTCCAAAGGACTCTCTATAGACCCTCTGCAGAACCTCCAAAGGACTCTCCTATAGACCATCTGCAGAATCTCCAAAGGACCCTCCAATAGACCCTCTGCAGAACCTCCAAAAGACTCTCCTATAGACCCTCTGCAGAATCTCCAAAGGACCCTCCAATAGACCCTCTGCAGAACCTCCAAAGGACTCTCTATAGACCCTCTGCAGAACCTCCAAAAGACTCCCCTATAGACCCTCTGCAGAATCTCCAAAGGACCCTCCAATAGACCCTCTGCAGAACCTCCAAAAGACTCCCCTATAGACCCTCTGCAGAACCTCCAAAGGACTCTCCTATAGACCCTCTGCAGAACCTCCAAAGGACTCTCCTATAGACCCTCTGCAGAACCTCCAAAGGACTCTCCAATAGACCCTCTGCAGAACCTTTAAAGGACTTTCCAATGGACCCTCTGCAAAACCTCCAAAGGACTCTCCAATAGACCCTCTGCAGAACCTCCAAAAGATCCTATAATAGACCCTCTGCAGAATCTTCAAAGGAACTGTAGAACCAATAGTGGAACTGCAGAACCTCCAGTTCAGCTATGTTCAACAGACTATCCATAAGAACTGCAGAAGGGAAATGAAGGGAACCTTCAGGGAACTACAGAACCTCTAGTAGAACTGCTCTCCCCCCAGTGGACCTATGGTACCATATTTTTACAGAATTTTGGAATGTTGAGTACAAATGTAAAACCTACACTTCACACTATGGTAGAACATCAACCTGACGTTTGATATCTTTTTATTGATTGTATGGATTatgcttgttgttttattgattttgtgGAACATAAAcgtttattgattattgatta

Function

GO: NA

KEGG:

id description
K17656 MSS51; mitochondrial splicing suppressor protein 51

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311728 lncRNA downstream 6742 554919 ~ 555164 (-) True G229298
TU311709 lncRNA downstream 33519 524471 ~ 528387 (-) False G229287
TU311711 lncRNA downstream 33519 524471 ~ 528387 (-) True G229287
TU311723 lncRNA downstream 51739 509857 ~ 510167 (-) True G229293
TU311677 lncRNA downstream 65947 494835 ~ 495959 (-) True G229273
TU311713 lncRNA upstream 17515 585602 ~ 589097 (-) True G229288
TU311748 lncRNA upstream 30640 598727 ~ 599324 (-) True G229304
TU311751 lncRNA upstream 36082 604169 ~ 604691 (-) True G229305
XM_022685588.1 mRNA downstream 15202 528403 ~ 546704 (-) False tbc1d24
XM_022685589.1 mRNA downstream 16861 528403 ~ 545045 (-) False tbc1d24
XM_022685587.1 mRNA downstream 16861 528403 ~ 545045 (-) True tbc1d24
XM_022685598.1 mRNA downstream 43089 498269 ~ 518817 (-) True LOC103036123
XM_015602868.2 mRNA downstream 90942 452117 ~ 470964 (-) True LOC103036421
XM_022685597.1 mRNA upstream 21735 589822 ~ 624742 (-) True LOC103039379
TU311617 other downstream 338593 173215 ~ 223313 (-) True G229233

Expression Profile