RNA id: CI01000000_09520406_09526332.mRNA



Basic Information


Item Value
RNA id CI01000000_09520406_09526332.mRNA
length 1293
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000000_09520406_09526332
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 9520051 ~ 9526391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATAAAAGGACTTCTATTTTCCAATTTAAACACAGGGAAAGAGGAACATTTAAAATTTCTGTTCCTATGTGAGCGAGGACAGTATGCCACACCATCATAATCCATACACTACTTATCCAGTTACATCCAGAGACCTTCACATACTCATCTCAAATTCCTTCATTCGGACTGCCGGAACTCAAAACCCGGAGAGCCTTTTAAAGGTCCAGTCCCATATATGAAGCCACAGTGCTTCTGGTTACTTAAGCTAGGCCACAGATACACAATACTAAGATTTCCCTGATCAAATATGATTACAGCAGTTATTCTCTCGGTGGGGAAGCCTGCCATCAGCTTCTAAACCGGAATGACAGAATGACACGGAAGCAGAGAGGAAAGGAGGCGAGTGTGGTTACAGGTCTGCGGAAGGAAGAAAGAGTATATGAGGTTGGAAAAACTGCAGTGCTCAGCACTCTAGTCATTGTTGTGATTCAGTACTGGAGCTCATGTCTGCCAGCTCTGCTCCAATTTACAACAGCGGCCCACAATGCACCGCTCTGGGCAAAGCAAGAATACAACCACACCTCTCTCTCTCCTCTCAGGACTCAATCTCTCGCTCACTACCGTAGAGCAGCAGACCACCATCAAATAAGCACAAATAAACAAGCTCCAAATGGAATTGTTAAAATCATGACTTTTTTTTTTTTTCTGCCTCAAACTCATGCAACTGATTATGCTAATGTTGCTAAGATGGGCACAAATGAACAAAGTAATGTGAAGACCCCAAGCTGCCCCACAAGCGCCTGTCAGAGTGGAGCTATGACTGATAATCACAGTCACATTCATCACAATGAAGGGGAAATGCTAGAGAGAGAGAGCGTTGAGGAAGGGGTCAAGCGCAAAGAGAGTGTTTTAGAAACAATTTTGTATTTAGGAAGAATGTCACGCCGCTCCCTTAACTCCAGCTTTAGCCTTTTAATTAGGGTTGCCATGGCGCCCTCGGCATACGAACAAAGCGTTTTAGCGTTTCAAGAGAAAGTGGCAAGAGAAGACCCACAGACCCATCCATTTCTATTAGGCAGGGGAAATGAGCACATTAGGGAAGAGAAGGGGGTGTCGGGCGGAAATGCCCCCCCTTGGGACGCTGAGCTGGGGAGTAAGGTCGAGCCCATCAGAGTCAACATCTACTTCAGCAGAGACAACCTGCTCCATGTCTTCTACAGCGACTGGACATTTTTTAGACAGTTTTGCTAAGTCACCCCCCTCTGGATATACTTTGGTTCTTTCTGTTCTCAGAGCAATGAACAGAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6946 lncRNA upstream 54682 9465158 ~ 9465369 (+) True G6266
TU6945 lncRNA upstream 55728 9464120 ~ 9464323 (+) True G6265
TU6944 lncRNA upstream 56246 9463361 ~ 9463805 (+) True G6264
TU6942 lncRNA upstream 59744 9460098 ~ 9460307 (+) True G6262
TU6941 lncRNA upstream 60067 9459770 ~ 9459984 (+) True G6261
TU6917 lncRNA downstream 97409 9623800 ~ 9627867 (+) False G6240
TU6920 lncRNA downstream 97409 9623800 ~ 9627867 (+) True G6240
TU7101 lncRNA downstream 132986 9659377 ~ 9659714 (+) True G6417
TU7112 lncRNA downstream 146945 9673336 ~ 9673805 (+) True G6428
TU7120 lncRNA downstream 159336 9685727 ~ 9686074 (+) True G6436
CI01000000_09174041_09195118.mRNA mRNA upstream 322603 9172304 ~ 9197448 (+) True CI01000000_09174041_09195118
CI01000000_09032021_09035754.mRNA mRNA upstream 483810 9031831 ~ 9036241 (+) True CI01000000_09032021_09035754
CI01000000_08996817_09010564.mRNA mRNA upstream 509409 8995996 ~ 9010642 (+) True CI01000000_08996817_09010564
CI01000000_08987936_08991586.mRNA mRNA upstream 528429 8987166 ~ 8991622 (+) True CI01000000_08987936_08991586
CI01000000_08980818_08984618.mRNA mRNA upstream 535433 8980439 ~ 8984618 (+) True CI01000000_08980818_08984618
CI01000000_09639185_09696791.mRNA mRNA downstream 111757 9638148 ~ 9696880 (+) True CI01000000_09639185_09696791
CI01000000_09783239_09786900.mRNA mRNA downstream 256848 9783239 ~ 9787542 (+) False CI01000000_09783239_09786900
CI01000000_09842885_09844618.mRNA mRNA downstream 316340 9842731 ~ 9845663 (+) True CI01000000_09842885_09844618
CI01000000_10066332_10095064.mRNA mRNA downstream 539418 10065809 ~ 10095764 (+) True CI01000000_10066332_10095064
CI01000000_10131547_10140955.mRNA mRNA downstream 605042 10131433 ~ 10141215 (+) True CI01000000_10131547_10140955
TU3177 other upstream 4793569 4725986 ~ 4726482 (+) False G2850
TU3086 other upstream 5065819 4453778 ~ 4454232 (+) True G2774
TU678 other upstream 7611243 1815453 ~ 1908808 (+) False G579
TU531 other upstream 8087197 1425121 ~ 1432854 (+) True G435
TU431 other upstream 8843114 671842 ~ 676937 (+) True G350
TU7529 other downstream 678440 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 900832 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 1452098 10978489 ~ 10980872 (+) True G7018
TU7890 other downstream 1718066 11244457 ~ 11245633 (+) True G7153
TU8274 other downstream 2610131 12136522 ~ 12137008 (+) True G7514

Expression Profile