RNA id: TU6946


Basic Information

Item Value
RNA id TU6946
length 212
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G6266
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 9465158 ~ 9465369 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTACACGAAAAAGATATCCTAAAACTTGAGTACTGATCTGCGAAAACTAAGAACGCTGTATTATGCATGCCAGGCCAGTAGGTGGCGATGTCACTTTGTAAAGAAACACCATTTTCACAAATTTGCGTTTTTGTAGTTTACATAGAGACGATAACGGTATTGCTTTCAAAAACTTGCACTTTGAACGCTGTGTTCAAAAGTTTGCGTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6945 lncRNA upstream 835 9464120 ~ 9464323 (+) True G6265
TU6944 lncRNA upstream 1353 9463361 ~ 9463805 (+) True G6264
TU6942 lncRNA upstream 4851 9460098 ~ 9460307 (+) True G6262
TU6941 lncRNA upstream 5174 9459770 ~ 9459984 (+) True G6261
TU6938 lncRNA upstream 14316 9450602 ~ 9450842 (+) True G6258
TU6918 lncRNA downstream 752 9466121 ~ 9627867 (+) False G6240
TU6917 lncRNA downstream 158431 9623800 ~ 9627867 (+) False G6240
TU6920 lncRNA downstream 158431 9623800 ~ 9627867 (+) True G6240
TU7101 lncRNA downstream 194008 9659377 ~ 9659714 (+) True G6417
TU7112 lncRNA downstream 207967 9673336 ~ 9673805 (+) True G6428
CI01000000_09174041_09195118.mRNA mRNA upstream 267710 9172304 ~ 9197448 (+) True CI01000000_09174041_09195118
CI01000000_09032021_09035754.mRNA mRNA upstream 428917 9031831 ~ 9036241 (+) True CI01000000_09032021_09035754
CI01000000_08996817_09010564.mRNA mRNA upstream 454516 8995996 ~ 9010642 (+) True CI01000000_08996817_09010564
CI01000000_08987936_08991586.mRNA mRNA upstream 473536 8987166 ~ 8991622 (+) True CI01000000_08987936_08991586
CI01000000_08980818_08984618.mRNA mRNA upstream 480540 8980439 ~ 8984618 (+) True CI01000000_08980818_08984618
CI01000000_09520406_09526332.mRNA mRNA downstream 54682 9520051 ~ 9526391 (+) True CI01000000_09520406_09526332
CI01000000_09639185_09696791.mRNA mRNA downstream 172779 9638148 ~ 9696880 (+) True CI01000000_09639185_09696791
CI01000000_09783239_09786900.mRNA mRNA downstream 317870 9783239 ~ 9787542 (+) False CI01000000_09783239_09786900
CI01000000_09842885_09844618.mRNA mRNA downstream 377362 9842731 ~ 9845663 (+) True CI01000000_09842885_09844618
CI01000000_10066332_10095064.mRNA mRNA downstream 600440 10065809 ~ 10095764 (+) True CI01000000_10066332_10095064
TU3177 other upstream 4738676 4725986 ~ 4726482 (+) False G2850
TU3086 other upstream 5010926 4453778 ~ 4454232 (+) True G2774
TU678 other upstream 7556350 1815453 ~ 1908808 (+) False G579
TU531 other upstream 8032304 1425121 ~ 1432854 (+) True G435
TU431 other upstream 8788221 671842 ~ 676937 (+) True G350
TU7529 other downstream 739462 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 961854 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 1513120 10978489 ~ 10980872 (+) True G7018
TU7890 other downstream 1779088 11244457 ~ 11245633 (+) True G7153
TU8274 other downstream 2671153 12136522 ~ 12137008 (+) True G7514

Expression Profile