RNA id: TU17845


Basic Information

Item Value
RNA id TU17845
length 234
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G15959
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5449160 ~ 5449393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCAATGCAAAATACATAAAACTAGAAAAAAATTAAAGTAAATAGTTCACCAAAAAAATGAAAATCATCACATATGGATGCGCTTTTTGGAGCTTCAAAAGCTCAGGTGCTATTCAATGCCATTACAAAGCTGGGAAGAGCCAGGATATTATTTAATATAACTCATATTGTGTTTGGCTGAAAGAAGAAAGTCATATACACCTATAGAATGGCTTGAGGGTGAGTAAATCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17840 lncRNA upstream 1219 5447301 ~ 5447941 (+) True G15957
TU17830 lncRNA upstream 1328 5447301 ~ 5447832 (+) False G15957
TU17820 lncRNA upstream 24821 5424040 ~ 5424339 (+) True G15950
TU17819 lncRNA upstream 25385 5423569 ~ 5423775 (+) True G15949
TU17818 lncRNA upstream 26632 5422303 ~ 5422528 (+) True G15948
TU17846 lncRNA downstream 16 5449409 ~ 5449651 (+) True G15960
TU17848 lncRNA downstream 12993 5462386 ~ 5462593 (+) True G15962
TU17850 lncRNA downstream 20647 5470040 ~ 5470249 (+) True G15964
TU17852 lncRNA downstream 22647 5472040 ~ 5472377 (+) True G15966
TU17854 lncRNA downstream 50946 5501780 ~ 5501974 (+) True G15968
CI01000001_05427300_05427801.mRNA mRNA upstream 21342 5427232 ~ 5427818 (+) True CI01000001_05427300_05427801
CI01000001_05401665_05402500.mRNA mRNA upstream 46389 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
CI01000001_05365373_05384192.mRNA mRNA upstream 64922 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05279884_05287123.mRNA mRNA upstream 161781 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05270301_05279405.mRNA mRNA upstream 168353 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05478200_05480124.mRNA mRNA downstream 28807 5478200 ~ 5480504 (+) True CI01000001_05478200_05480124
CI01000001_05487409_05494726.mRNA mRNA downstream 37909 5487302 ~ 5495336 (+) True CI01000001_05487409_05494726
CI01000001_05498507_05500723.mRNA mRNA downstream 48817 5498210 ~ 5501116 (+) False CI01000001_05498507_05500723
CI01000001_05565644_05568075.mRNA mRNA downstream 116251 5565644 ~ 5568488 (+) True CI01000001_05565644_05568075
CI01000001_05579315_05580553.mRNA mRNA downstream 129922 5579315 ~ 5580703 (+) True CI01000001_05579315_05580553
TU17699 other upstream 159204 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 384456 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 385231 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1827709 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3778156 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU17891 other downstream 262492 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2083179 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2083247 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2083371 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2582731 8032124 ~ 8032483 (+) True G17234

Expression Profile