RNA id: CI01000001_05401665_05402500.mRNA


Basic Information

Item Value
RNA id CI01000001_05401665_05402500.mRNA
length 760
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000001_05401665_05402500
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5401665 ~ 5402771 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGTCCCTCCTGATGTTTGTCACACTGCTTCATCTCATCACACTGGCGGTTCTCTTTATCGCCACCATGGAGAAGTCCTGGTGGGTTTGTGACGGCACAGAAAGTTCAGACCTATGGTACAACTGCCGATTTGACAATGAAACAGAGGTGTGGTTTTGTGCAACGTCAAAAGAGACGGAGTGGCTTCAAGCTGTCCAGGTTCTGATGGTCCTGTCGGTGGTTTTCTCCTCCATTTCATTCCTGATATTCCTGGGACAACTCTTCACCATGTCTAAAGGAGGACTCTTTTACCTCACTGGTGTCTGCCAGGCATTTGCCGGCCTCAACGTCTTCACTGCCGTGCTCATTTACACTCTGCACAATAAAGAAATCGTTCGGGACTCGAGCTCAGGACACTTCGGCTACTGCTTTTTCTTGGCGTGGGTTTGTGTACCTTTGCTCCTGTGCAGTGGAATCATGTACATCCATCTGCGCAAAAGGGAATAGCAACGAGTGTCCTAAAAAAAAAGACCAGCAATGCGAAGAATGTTTGCTGTTGACATACTCCACTGAATGATTATATACTTCATGATATCTCTATGCAACAAAAAAAGACTTATTTTTTGCTTATTTAGACCTTATTTAGCTACACATAAATATACATGGCTGAAATATAGCCCGGACACAGCCCATGTCGAAGATCAGCACAACTTGGTTAACTCTTAAAGGGCGACCATGACTAATATATCTGATTAGCTGAATTATAGCTAATTTAATA

Function

GO:

id name namespace
GO:0016049 cell growth biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17776 lncRNA upstream 43763 5357630 ~ 5357902 (+) True G15911
TU17718 lncRNA upstream 59773 5337120 ~ 5341892 (+) True G15854
TU17700 lncRNA upstream 83672 5317525 ~ 5317993 (+) False G15839
TU17702 lncRNA upstream 83765 5317486 ~ 5317900 (+) False G15839
TU17780 lncRNA downstream 8712 5411483 ~ 5411690 (+) True G15915
TU17818 lncRNA downstream 19532 5422303 ~ 5422528 (+) True G15948
TU17819 lncRNA downstream 20798 5423569 ~ 5423775 (+) True G15949
TU17820 lncRNA downstream 21269 5424040 ~ 5424339 (+) True G15950
TU17830 lncRNA downstream 44530 5447301 ~ 5447832 (+) False G15957
CI01000001_05365373_05384192.mRNA mRNA upstream 17427 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05279884_05287123.mRNA mRNA upstream 114286 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05270301_05279405.mRNA mRNA upstream 120858 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05223340_05229184.mRNA mRNA upstream 172006 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05075984_05079729.mRNA mRNA upstream 321934 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05427300_05427801.mRNA mRNA downstream 24461 5427232 ~ 5427818 (+) True CI01000001_05427300_05427801
CI01000001_05478200_05480124.mRNA mRNA downstream 75429 5478200 ~ 5480504 (+) True CI01000001_05478200_05480124
CI01000001_05487409_05494726.mRNA mRNA downstream 84531 5487302 ~ 5495336 (+) True CI01000001_05487409_05494726
CI01000001_05498507_05500723.mRNA mRNA downstream 95439 5498210 ~ 5501116 (+) False CI01000001_05498507_05500723
CI01000001_05565644_05568075.mRNA mRNA downstream 162873 5565644 ~ 5568488 (+) True CI01000001_05565644_05568075
TU17699 other upstream 111709 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 336961 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 337736 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1780214 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3730661 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU17891 other downstream 309114 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2129801 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2129869 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2129993 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2629353 8032124 ~ 8032483 (+) True G17234

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042880 True 1094 mRNA 0.46 5 NC_007134.7 18779043 ~ 18794561 (+)