G15839


Basic Information

Item Value
gene id G15839
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5317486 ~ 5317993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17702
GAAGCCAACAGTATTTTAGAATCTATAATTTATTTTGATAATATTGTAATCCACATATCATTGATGACATCATCTACTAGAGAAACACACTGCTAAAGGGAAGGCATGGGTGACGGGGTGGAAGTCTAGGGAGACCAGTAACCAGAGGCATTAATGTGCAGCGAAAAGGAAGTGAGTGCCATTGTACTTCCTGTGACTACATGTGCCTTTTCACAGTTTGATATTTTCTCCAGTCACTTCTCTGTTGGACAGTTCCTGAGCTGTTCTGAGTGTTTGGTGGCACTTATCTTCACAGTTGTCTTTTCAGTTTTCATATGGAGCCGACGGGATAAAAAAGGCTACAGAGCTGTGCTTATTTTGGCCGTCCCACCTGTTCCCACGCGAGACCATCCCAGCACATTGCATGCATATGTGC
>TU17700
AATATTGTAATCCACATATCATTGATGACATCATCTACTAGAGAAACACACTGCTAAAGGGAAGGCATGGGTGACGGGGTGGAAGTCTAGGGAGACCAGTAACCAGAGGCATTAATGTGCAGCGAAAAGGAAGTGAGTGCCATTGTACTTCCTGTGACTACATGTGCCTTTTCACAGTTTGATATTTTCTCCAGTCACTTCTCTGTTGGACAGTTCCTGAGCTGTTCTGAGTGTTTGGTGGCACTTATCTTCACAGTTGTCTTTTCAGTTTTCATATGGAGCCGACGGGATAAAAAAGGCTACAGAGCTGTGCTTATTTTGGCCGTCCCACCTGTTCCCACGCGAGACCATCCCAGCACATTGCATGCATATGTGCTGGTTCCTTTACGACTGAATGCTTTTTAAAGAATAATCCATTGTAATGCAAATAATTGTAAAAAACGTAATGCAATTAAATGTTTAAAAAAAA
>TU17701
AATATTGTAATCCACATATCATTGATGACATCATCTACTAGAGAAACACACTGCTAAAGGGAAGGCATGGGTGACGGGGTGGAAGTCTAGGGAGACCAGTAACCAGAGGCATTAATGTGCAGCGAAAAGGAAGTGAGTGCCATTGTACTTCCTGTGACTACATGTGCCTTTTCACAGTTTGATATTTTCTCCAGTCACTTCTCTGTTGGACAGTTCCTGAGCTGTTCTGAGTGTTTGGTGGCACTTATCTTCACAGTTGTCTTTTCAGTTTTCATATGGAGCCGACGGGATAAAAAAGGCTACAGAGCTGTGCTTATTTTGGCCGTCCCACCTGTTCCCACGCGAGACCATCCCAGCACATTGCATGCATATGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17702 False 415 lncRNA 0.44 1 5317486 5317900
TU17700 False 469 lncRNA 0.41 1 5317525 5317993
TU17701 True 376 lncRNA 0.46 1 5317525 5317900

Neighbor

gene id symbol gene type direction distance location
CI01000001_05279884_05287123 NA coding upstream 30107 5279837 ~ 5287698 (+)
CI01000001_05270301_05279405 AVPR2AB coding upstream 36679 5270301 ~ 5280807 (+)
CI01000001_05223340_05229184 IDH3G coding upstream 87827 5223340 ~ 5229659 (+)
CI01000001_05075984_05079729 NA coding upstream 237755 5075934 ~ 5079731 (+)
CI01000001_05071017_05075175 NA coding upstream 241733 5069303 ~ 5075753 (+)
CI01000001_05365373_05384192 MYH7B, MYH7BA, MYH7BB coding downstream 47169 5365162 ~ 5384238 (+)
CI01000001_05401665_05402500 EMP3B, EMP3 coding downstream 83672 5401665 ~ 5402771 (+)
CI01000001_05427300_05427801 NA coding downstream 109239 5427232 ~ 5427818 (+)
CI01000001_05478200_05480124 NA coding downstream 160207 5478200 ~ 5480504 (+)
CI01000001_05487409_05494726 NA coding downstream 169309 5487302 ~ 5495336 (+)
G15895 NA non-coding upstream 33763 5283460 ~ 5283723 (+)
G15846 NA non-coding upstream 103234 5212269 ~ 5214252 (+)
G15879 NA non-coding upstream 119731 5197546 ~ 5197755 (+)
G15878 NA non-coding upstream 120245 5197025 ~ 5197241 (+)
G15877 NA non-coding upstream 120558 5196661 ~ 5196928 (+)
G15854 NA non-coding downstream 19127 5337120 ~ 5341892 (+)
G15911 NA non-coding downstream 39637 5357630 ~ 5357902 (+)
G15915 NA non-coding downstream 93490 5411483 ~ 5411690 (+)
G15948 NA non-coding downstream 104310 5422303 ~ 5422528 (+)
G15949 NA non-coding downstream 105576 5423569 ~ 5423775 (+)
G15794 NA other upstream 252782 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 1696035 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3646482 1667762 ~ 1671167 (+)
G13051 NA other upstream 4272334 1043713 ~ 1045152 (+)
G15995 NA other downstream 393892 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2214579 7531541 ~ 7540586 (+)
G17234 NA other downstream 2714131 8032124 ~ 8032483 (+)
G17353 NA other downstream 3898029 9216022 ~ 9228859 (+)
G17354 NA other downstream 3916470 9234463 ~ 9240677 (+)

Expression


Co-expression Network