RNA id: TU17700


Basic Information

Item Value
RNA id TU17700
length 469
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G15839
representative False

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5317486 ~ 5317993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATATTGTAATCCACATATCATTGATGACATCATCTACTAGAGAAACACACTGCTAAAGGGAAGGCATGGGTGACGGGGTGGAAGTCTAGGGAGACCAGTAACCAGAGGCATTAATGTGCAGCGAAAAGGAAGTGAGTGCCATTGTACTTCCTGTGACTACATGTGCCTTTTCACAGTTTGATATTTTCTCCAGTCACTTCTCTGTTGGACAGTTCCTGAGCTGTTCTGAGTGTTTGGTGGCACTTATCTTCACAGTTGTCTTTTCAGTTTTCATATGGAGCCGACGGGATAAAAAAGGCTACAGAGCTGTGCTTATTTTGGCCGTCCCACCTGTTCCCACGCGAGACCATCCCAGCACATTGCATGCATATGTGCTGGTTCCTTTACGACTGAATGCTTTTTAAAGAATAATCCATTGTAATGCAAATAATTGTAAAAAACGTAATGCAATTAAATGTTTAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17759 lncRNA upstream 33802 5283460 ~ 5283723 (+) True G15895
TU17709 lncRNA upstream 103273 5212269 ~ 5214252 (+) True G15846
TU17743 lncRNA upstream 119770 5197546 ~ 5197755 (+) True G15879
TU17742 lncRNA upstream 120284 5197025 ~ 5197241 (+) True G15878
TU17741 lncRNA upstream 120597 5196661 ~ 5196928 (+) True G15877
TU17718 lncRNA downstream 19127 5337120 ~ 5341892 (+) True G15854
TU17776 lncRNA downstream 39637 5357630 ~ 5357902 (+) True G15911
TU17780 lncRNA downstream 93490 5411483 ~ 5411690 (+) True G15915
TU17818 lncRNA downstream 104310 5422303 ~ 5422528 (+) True G15948
TU17819 lncRNA downstream 105576 5423569 ~ 5423775 (+) True G15949
CI01000001_05279884_05287123.mRNA mRNA upstream 30146 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05270301_05279405.mRNA mRNA upstream 36718 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05223340_05229184.mRNA mRNA upstream 87866 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05075984_05079729.mRNA mRNA upstream 237794 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 241772 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05365373_05384192.mRNA mRNA downstream 47169 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 83672 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
CI01000001_05427300_05427801.mRNA mRNA downstream 109239 5427232 ~ 5427818 (+) True CI01000001_05427300_05427801
CI01000001_05478200_05480124.mRNA mRNA downstream 160207 5478200 ~ 5480504 (+) True CI01000001_05478200_05480124
CI01000001_05487409_05494726.mRNA mRNA downstream 169309 5487302 ~ 5495336 (+) True CI01000001_05487409_05494726
TU17699 other upstream 27569 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 252821 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 253596 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1696074 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3646521 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU17891 other downstream 393892 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2214579 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2214647 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2214771 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2714131 8032124 ~ 8032483 (+) True G17234

Expression Profile