RNA id: TU17709


Basic Information

Item Value
RNA id TU17709
length 931
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G15846
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5212269 ~ 5214252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGCAGCACATGAGCAGCAGGTGAGATGGTACACAGGTCGGGTTGAGTAGGGCAGGGCAGTCAGAGCGCATGCAGGCTAAAAAGGCTCGCGTACGGCGGCTACGGTCCTCTGAGGCTCTGCCCAGCCACAACCGCCTGAGGTTGGGACACGTCCACTCGCGGAAACACAGGGCTGGAACGAGCTCAGGGGTCAGGGCAGATTTAGCTTTACTGGCACACCACTCCTTTACAATCACCGGGGGCACGTCAACTGGACTACGCTTGCGCATGGCTAGTCTCTCAAGCCTCCGCTGGGTCTCAGCCAAGCTGAACAGCACCCCGTAGGCATACTGGCGGGCAGAACGGAAAAGTAGAGAAGCAGGAGGCAGGTCTGGGTTGCACTCATCCTCTATACACACTGGCATCTTCATTTCCCCCTTGGTCAAGATGTGGTAGATCTGTGGATACATGAGTCCTCTCCTGTGTCTGTGCTCCGCCACTCTCAGCACCTCGGCACTGACCTGTGGAAGGGGTGGAGTTGTGATGTCCATGTGAGTCCGTGTTGGCATGGACAGCAATGATGGAATGGACGGCCCACTTCCGTTACCATGGTGTCCGTCCCCAGAGCCACTGCCGCCCCGTCCACTGGGATCTTCCCATCTCGTGGACTTGTCAGCCAAATGATTAGTGCTGGTGTCATTTTGCTCCTCCCCATCTGAAGACGACGACGATGAGGGGGAGGGGCCTGTGGGAGCAGCAGTGTGATGATTGGGCTGTCGGTTGCCACCTTGAGAGGAATCATATGGAGCAGACCAATCAGTAAAGCCCATTTTCCCAACTAGTGAATCATTACAGTCCTGCAGAGGCTGAGTTGGGTTCTGGCATAAAAGGGCTGGACCAGTGGCAGGGCTGGGTCCGTAGAGCCCACCTGGATAAGGCACCTTAACCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17743 lncRNA upstream 14514 5197546 ~ 5197755 (+) True G15879
TU17742 lncRNA upstream 15028 5197025 ~ 5197241 (+) True G15878
TU17741 lncRNA upstream 15341 5196661 ~ 5196928 (+) True G15877
TU17739 lncRNA upstream 28909 5183072 ~ 5183360 (+) True G15875
TU17656 lncRNA upstream 132286 5079936 ~ 5079983 (+) True G15797
TU17759 lncRNA downstream 69208 5283460 ~ 5283723 (+) True G15895
TU17702 lncRNA downstream 103234 5317486 ~ 5317900 (+) False G15839
TU17700 lncRNA downstream 103273 5317525 ~ 5317993 (+) False G15839
TU17701 lncRNA downstream 103273 5317525 ~ 5317900 (+) True G15839
TU17718 lncRNA downstream 122868 5337120 ~ 5341892 (+) True G15854
CI01000001_05075984_05079729.mRNA mRNA upstream 132538 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 136516 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05051664_05059659.mRNA mRNA upstream 152329 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_04993860_04998535.mRNA mRNA upstream 213508 4993860 ~ 4998761 (+) True CI01000001_04993860_04998535
CI01000001_04976994_04988795.mRNA mRNA upstream 223187 4976347 ~ 4989082 (+) True CI01000001_04976994_04988795
CI01000001_05223340_05229184.mRNA mRNA downstream 9088 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05270301_05279405.mRNA mRNA downstream 56049 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05279884_05287123.mRNA mRNA downstream 65585 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05365373_05384192.mRNA mRNA downstream 150910 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 187413 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
TU17650 other upstream 147565 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 148340 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1590818 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3541265 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4167117 1043713 ~ 1045152 (+) True G13051
TU17699 other downstream 72497 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 497633 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2318320 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2318388 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2318512 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781

Expression Profile